Information for 1-NGCCACCAGRKGGCGC (Motif 2)

A C G T C T A G A G T C A G T C C T G A A T G C G A T C C G T A A C T G C T G A A C G T A C T G A C T G T G A C C T A G T A G C
Reverse Opposite:
A T C G G A T C A C T G A G T C A G T C G T C A A G C T A G T C A C G T C T A G A T C G G A C T A C T G A C T G G A T C T G C A
p-value:1e-61
log p-value:-1.420e+02
Information Content per bp:1.720
Number of Target Sequences with motif43.0
Percentage of Target Sequences with motif5.56%
Number of Background Sequences with motif41.0
Percentage of Background Sequences with motif0.09%
Average Position of motif in Targets49.6 +/- 26.3bp
Average Position of motif in Background45.0 +/- 28.1bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.02
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CTCF/MA0139.1/Jaspar

Match Rank:1
Score:0.95
Offset:-1
Orientation:forward strand
Alignment:-NGCCACCAGRKGGCGC--
TGGCCACCAGGGGGCGCTA
 A C G T A C G T C T A G A G T C A G T C C T G A A T G C G A T C C G T A A C T G C T G A A C G T A C T G A C T G T G A C C T A G T A G C A C G T A C G T
G A C T C A T G C T A G G T A C G T A C C G T A T A G C G A T C C T G A C T A G C T A G C A T G C T A G C A T G G T A C C T A G T A G C G A C T T C G A

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:2
Score:0.95
Offset:1
Orientation:reverse strand
Alignment:NGCCACCAGRKGGCGC-----
-GCCASCAGGGGGCGCYVNNG
 A C G T C T A G A G T C A G T C C T G A A T G C G A T C C G T A A C T G C T G A A C G T A C T G A C T G T G A C C T A G T A G C A C G T A C G T A C G T A C G T A C G T
A C G T C T A G T A G C A G T C C G T A T A G C G A T C C G T A A C T G C T A G C A T G A C T G A C T G G T A C C T A G A T G C G A T C T C A G A C T G T C A G A T C G

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:3
Score:0.94
Offset:-1
Orientation:reverse strand
Alignment:-NGCCACCAGRKGGCGC---
TGGCCACCAGGTGGCACTNT
 A C G T A C G T C T A G A G T C A G T C C T G A A T G C G A T C C G T A A C T G C T G A A C G T A C T G A C T G T G A C C T A G T A G C A C G T A C G T A C G T
G A C T C A T G C T A G G T A C G A T C C G T A T A G C G A T C C T G A A C T G T C A G C A G T C T A G C A T G G A T C C T G A T A G C G A C T T C G A A C G T

NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer

Match Rank:4
Score:0.66
Offset:4
Orientation:reverse strand
Alignment:NGCCACCAGRKGGCGC
----AACAGATGGC--
 A C G T C T A G A G T C A G T C C T G A A T G C G A T C C G T A A C T G C T G A A C G T A C T G A C T G T G A C C T A G T A G C
A C G T A C G T A C G T A C G T C T G A T C G A A G T C G T C A A C T G T G C A G C A T A C T G A C T G A G T C A C G T A C G T

NeuroG2(bHLH)/Fibroblast-NeuroG2-ChIP-Seq(GSE75910)/Homer

Match Rank:5
Score:0.61
Offset:4
Orientation:reverse strand
Alignment:NGCCACCAGRKGGCGC
----AACAGATGGT--
 A C G T C T A G A G T C A G T C C T G A A T G C G A T C C G T A A C T G C T G A A C G T A C T G A C T G T G A C C T A G T A G C
A C G T A C G T A C G T A C G T T C G A T C G A A G T C C G T A A C T G G T C A G C A T A C T G A C T G A G C T A C G T A C G T

PB0076.1_Sp4_1/Jaspar

Match Rank:6
Score:0.58
Offset:3
Orientation:reverse strand
Alignment:NGCCACCAGRKGGCGC----
---NNNAAGGGGGCGGGNNN
 A C G T C T A G A G T C A G T C C T G A A T G C G A T C C G T A A C T G C T G A A C G T A C T G A C T G T G A C C T A G T A G C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T T A C G T C G A A T C G C T G A C T G A C T A G C A T G C T A G A T C G A C T G G A T C A C T G A C T G C A T G C T G A G A T C T G A C

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:7
Score:0.58
Offset:1
Orientation:forward strand
Alignment:NGCCACCAGRKGGCGC
-CACAGCAGGGGG---
 A C G T C T A G A G T C A G T C C T G A A T G C G A T C C G T A A C T G C T G A A C G T A C T G A C T G T G A C C T A G T A G C
A C G T T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G A C G T A C G T A C G T

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:8
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:NGCCACCAGRKGGCGC
DCHCAGCAGGRGGCC-
 A C G T C T A G A G T C A G T C C T G A A T G C G A T C C G T A A C T G C T G A A C G T A C T G A C T G T G A C C T A G T A G C
C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C A C G T

Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer

Match Rank:9
Score:0.57
Offset:2
Orientation:forward strand
Alignment:NGCCACCAGRKGGCGC
--VNAVCAGCTGGC--
 A C G T C T A G A G T C A G T C C T G A A T G C G A T C C G T A A C T G C T G A A C G T A C T G A C T G T G A C C T A G T A G C
A C G T A C G T T C A G A C G T T C G A T A G C A G T C C G T A A C T G G T A C A C G T A C T G A T C G A G T C A C G T A C G T

Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer

Match Rank:10
Score:0.56
Offset:4
Orientation:reverse strand
Alignment:NGCCACCAGRKGGCGC
----AACAKATGGY--
 A C G T C T A G A G T C A G T C C T G A A T G C G A T C C G T A A C T G C T G A A C G T A C T G A C T G T G A C C T A G T A G C
A C G T A C G T A C G T A C G T C T G A T G C A A G T C T C G A A C T G T G C A G C A T A C T G A C T G G A C T A C G T A C G T