Information for 2-CYGGGCCTGCTGC (Motif 3)

A T G C A G C T C T A G A C T G A T C G A G T C A G T C C G A T A C T G G T A C A G C T A C T G A T G C
Reverse Opposite:
A T C G A G T C C T G A A C T G A G T C G C T A A C T G A C T G A T G C A G T C A G T C T C G A A T C G
p-value:1e-13
log p-value:-3.000e+01
Information Content per bp:1.837
Number of Target Sequences with motif17.0
Percentage of Target Sequences with motif2.03%
Number of Background Sequences with motif75.6
Percentage of Background Sequences with motif0.16%
Average Position of motif in Targets42.6 +/- 25.2bp
Average Position of motif in Background47.5 +/- 34.7bp
Strand Bias (log2 ratio + to - strand density)-0.5
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer

Match Rank:1
Score:0.70
Offset:0
Orientation:reverse strand
Alignment:CYGGGCCTGCTGC
CTAGGCCT-----
 A T G C A G C T C T A G A C T G A T C G A G T C A G T C C G A T A C T G G T A C A G C T A C T G A T G C
T A G C A G C T C T G A A C T G A T C G A T G C G T A C A C G T A C G T A C G T A C G T A C G T A C G T

Zfx/MA0146.2/Jaspar

Match Rank:2
Score:0.69
Offset:-5
Orientation:forward strand
Alignment:-----CYGGGCCTGCTGC
GGGGCCGAGGCCTG----
 A C G T A C G T A C G T A C G T A C G T A T G C A G C T C T A G A C T G A T C G A G T C A G T C C G A T A C T G G T A C A G C T A C T G A T G C
A T C G A T C G T A C G C T A G A T G C G A T C A C T G T G C A T C A G A T C G A G T C A G T C A G C T T A C G A C G T A C G T A C G T A C G T

ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer

Match Rank:3
Score:0.68
Offset:0
Orientation:reverse strand
Alignment:CYGGGCCTGCTGC
CNAGGCCT-----
 A T G C A G C T C T A G A C T G A T C G A G T C A G T C C G A T A C T G G T A C A G C T A C T G A T G C
A T G C G A T C C T G A A C T G A C T G A G T C A G T C A G C T A C G T A C G T A C G T A C G T A C G T

PB0205.1_Zic1_2/Jaspar

Match Rank:4
Score:0.66
Offset:2
Orientation:reverse strand
Alignment:CYGGGCCTGCTGC----
--TNTCCTGCTGTGNNG
 A T G C A G C T C T A G A C T G A T C G A G T C A G T C C G A T A C T G G T A C A G C T A C T G A T G C A C G T A C G T A C G T A C G T
A C G T A C G T G C A T A G T C C A G T T G A C G T A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G C A T C A T G T C A G

PB0207.1_Zic3_2/Jaspar

Match Rank:5
Score:0.66
Offset:2
Orientation:reverse strand
Alignment:CYGGGCCTGCTGC----
--NNTCCTGCTGTGNNN
 A T G C A G C T C T A G A C T G A T C G A G T C A G T C C G A T A C T G G T A C A G C T A C T G A T G C A C G T A C G T A C G T A C G T
A C G T A C G T G C A T A T C G C A G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G G A C T A C T G G A T C G C A T G T A C

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:6
Score:0.65
Offset:5
Orientation:forward strand
Alignment:CYGGGCCTGCTGC--
-----CCTGCTGAGH
 A T G C A G C T C T A G A C T G A T C G A G T C A G T C C G A T A C T G G T A C A G C T A C T G A T G C A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A G T C G T A C A G C T C T A G A G T C C G A T A C T G C G T A A C T G G T C A

PB0206.1_Zic2_2/Jaspar

Match Rank:7
Score:0.65
Offset:2
Orientation:reverse strand
Alignment:CYGGGCCTGCTGC----
--TCNCCTGCTGNGNNN
 A T G C A G C T C T A G A C T G A T C G A G T C A G T C C G A T A C T G G T A C A G C T A C T G A T G C A C G T A C G T A C G T A C G T
A C G T A C G T G C A T A G T C A C G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G A C T C A T G C T A G

Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer

Match Rank:8
Score:0.63
Offset:2
Orientation:forward strand
Alignment:CYGGGCCTGCTGC-
--NNVVCAGCTGBN
 A T G C A G C T C T A G A C T G A T C G A G T C A G T C C G A T A C T G G T A C A G C T A C T G A T G C A C G T
A C G T A C G T C T A G A G T C T A C G T A C G T G A C C G T A A C T G T A G C G C A T C A T G A T G C A G C T

SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer

Match Rank:9
Score:0.63
Offset:6
Orientation:reverse strand
Alignment:CYGGGCCTGCTGC-
------CAGCTGNT
 A T G C A G C T C T A G A C T G A T C G A G T C A G T C C G A T A C T G G T A C A G C T A C T G A T G C A C G T
A C G T A C G T A C G T A C G T A C G T A C G T G T A C C G T A A C T G T G A C C G A T A C T G A G T C G A C T

Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer

Match Rank:10
Score:0.62
Offset:2
Orientation:forward strand
Alignment:CYGGGCCTGCTGC-
--VNAVCAGCTGGC
 A T G C A G C T C T A G A C T G A T C G A G T C A G T C C G A T A C T G G T A C A G C T A C T G A T G C A C G T
A C G T A C G T T C A G A C G T T C G A T A G C A G T C C G T A A C T G G T A C A C G T A C T G A T C G A G T C