Information for 4-TTTAATCTGC (Motif 5)

A C G T A C G T G C A T G T C A G C T A C A G T G T A C G C A T T C A G A T G C
Reverse Opposite:
T A C G A G T C C G T A C A T G G T C A C G A T C A G T C G T A T G C A G T C A
p-value:1e-12
log p-value:-2.941e+01
Information Content per bp:1.652
Number of Target Sequences with motif93.0
Percentage of Target Sequences with motif12.24%
Number of Background Sequences with motif2602.8
Percentage of Background Sequences with motif5.33%
Average Position of motif in Targets49.4 +/- 25.6bp
Average Position of motif in Background49.1 +/- 28.4bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.08
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Arid3a/MA0151.1/Jaspar

Match Rank:1
Score:0.74
Offset:0
Orientation:reverse strand
Alignment:TTTAATCTGC
TTTAAT----
 A C G T A C G T G C A T G T C A G C T A C A G T G T A C G C A T T C A G A T G C
G C A T A C G T A C G T C T G A C G T A A C G T A C G T A C G T A C G T A C G T

OTX2/MA0712.1/Jaspar

Match Rank:2
Score:0.71
Offset:1
Orientation:forward strand
Alignment:TTTAATCTGC
-TTAATCCT-
 A C G T A C G T G C A T G T C A G C T A C A G T G T A C G C A T T C A G A T G C
A C G T G A C T G C A T C G T A C G T A C A G T G A T C A G T C A C G T A C G T

OTX1/MA0711.1/Jaspar

Match Rank:3
Score:0.71
Offset:1
Orientation:forward strand
Alignment:TTTAATCTGC
-TTAATCCG-
 A C G T A C G T G C A T G T C A G C T A C A G T G T A C G C A T T C A G A T G C
A C G T G A C T G C A T C G T A C G T A C A G T T A G C A T G C A T C G A C G T

GSC2/MA0891.1/Jaspar

Match Rank:4
Score:0.68
Offset:0
Orientation:forward strand
Alignment:TTTAATCTGC
CCTAATCCGC
 A C G T A C G T G C A T G T C A G C T A C A G T G T A C G C A T T C A G A T G C
T G A C G A T C C G A T G C T A G C T A A C G T G T A C A G T C A T C G G A T C

GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer

Match Rank:5
Score:0.68
Offset:1
Orientation:reverse strand
Alignment:TTTAATCTGC
-YTAATCCY-
 A C G T A C G T G C A T G T C A G C T A C A G T G T A C G C A T T C A G A T G C
A C G T G A T C G C A T C G T A C G T A A C G T G A T C G A T C A G T C A C G T

PB0185.1_Tcf1_2/Jaspar

Match Rank:6
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:TTTAATCTGC----
NNTAATCCNGNCNN
 A C G T A C G T G C A T G T C A G C T A C A G T G T A C G C A T T C A G A T G C A C G T A C G T A C G T A C G T
G A T C G T A C G C A T T G C A G T C A G A C T G T A C A G T C T C A G A T C G C T A G A G T C T G C A C G T A

Pitx1/MA0682.1/Jaspar

Match Rank:7
Score:0.66
Offset:1
Orientation:forward strand
Alignment:TTTAATCTGC
-TTAATCCC-
 A C G T A C G T G C A T G T C A G C T A C A G T G T A C G C A T T C A G A T G C
A C G T G A C T G C A T T C G A C G T A C A G T G A T C G A T C G T A C A C G T

PH0126.1_Obox6/Jaspar

Match Rank:8
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-TTTAATCTGC----
CNATAATCCGNTTNT
 A C G T A C G T A C G T G C A T G T C A G C T A C A G T G T A C G C A T T C A G A T G C A C G T A C G T A C G T A C G T
T A G C C T G A G C T A C G A T C G T A C G T A A C G T G T A C A G T C A T C G G A C T C G A T G A C T C G A T C A G T

Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer

Match Rank:9
Score:0.64
Offset:0
Orientation:forward strand
Alignment:TTTAATCTGC
NYTAATCCYB
 A C G T A C G T G C A T G T C A G C T A C A G T G T A C G C A T T C A G A T G C
A T C G G A C T C G A T C G T A C G T A C A G T G A T C G A T C G A T C A G C T

CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer

Match Rank:10
Score:0.64
Offset:0
Orientation:forward strand
Alignment:TTTAATCTGC
GCTAATCC--
 A C G T A C G T G C A T G T C A G C T A C A G T G T A C G C A T T C A G A T G C
A T C G G A T C G C A T C G T A G T C A A C G T A T G C A G T C A C G T A C G T