Information for 20-YCCTCTSTGTTCAGAR (Motif 29)

A G T C A G T C A G T C A C G T A G T C A G C T A T C G C G A T A C T G C A G T A C G T A G T C C G T A T A C G C T G A C T G A
Reverse Opposite:
A G C T A G C T A G T C A C G T A C T G T C G A G T C A A G T C C G T A A T G C C T G A C T A G C G T A A C T G C T A G C T A G
p-value:1e-8
log p-value:-1.874e+01
Information Content per bp:1.773
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.66%
Number of Background Sequences with motif4.3
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets66.6 +/- 14.4bp
Average Position of motif in Background72.7 +/- 6.8bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0104.1_Zscan4_1/Jaspar

Match Rank:1
Score:0.52
Offset:2
Orientation:reverse strand
Alignment:YCCTCTSTGTTCAGAR---
--NTNTATGTGCACATNNN
 A G T C A G T C A G T C A C G T A G T C A G C T A T C G C G A T A C T G C A G T A C G T A G T C C G T A T A C G C T G A C T G A A C G T A C G T A C G T
A C G T A C G T C A G T G C A T C G A T C G A T C T G A C G A T T C A G A G C T C T A G A G T C C T G A A G T C G C T A G A C T A C T G C A G T G T C A

Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer

Match Rank:2
Score:0.52
Offset:3
Orientation:forward strand
Alignment:YCCTCTSTGTTCAGAR
---YCTTTGTTCC---
 A G T C A G T C A G T C A C G T A G T C A G C T A T C G C G A T A C T G C A G T A C G T A G T C C G T A T A C G C T G A C T G A
A C G T A C G T A C G T A G T C A G T C C G A T A C G T A C G T A C T G A C G T A G C T A G T C A G T C A C G T A C G T A C G T

PB0044.1_Mtf1_1/Jaspar

Match Rank:3
Score:0.51
Offset:1
Orientation:forward strand
Alignment:YCCTCTSTGTTCAGAR-
-GGGCCGTGTGCAAAAA
 A G T C A G T C A G T C A C G T A G T C A G C T A T C G C G A T A C T G C A G T A C G T A G T C C G T A T A C G C T G A C T G A A C G T
A C G T C A T G A C T G C T A G G A T C G T A C C A T G C A G T A C T G G A C T C A T G G T A C C G T A T G C A G T C A C T G A G C A T

RUNX1/MA0002.2/Jaspar

Match Rank:4
Score:0.50
Offset:2
Orientation:forward strand
Alignment:YCCTCTSTGTTCAGAR
--GTCTGTGGTTT---
 A G T C A G T C A G T C A C G T A G T C A G C T A T C G C G A T A C T G C A G T A C G T A G T C C G T A T A C G C T G A C T G A
A C G T A C G T A C T G A G C T A G T C C G A T A T C G G A C T A C T G A C T G A G C T G A C T C G A T A C G T A C G T A C G T

RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:5
Score:0.49
Offset:3
Orientation:forward strand
Alignment:YCCTCTSTGTTCAGAR
---GCTGTGGTTT---
 A G T C A G T C A G T C A C G T A G T C A G C T A T C G C G A T A C T G C A G T A C G T A G T C C G T A T A C G C T G A C T G A
A C G T A C G T A C G T A C T G G A T C G A C T A C T G A C G T C A T G A C T G A C G T A G C T C G A T A C G T A C G T A C G T

Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer

Match Rank:6
Score:0.49
Offset:3
Orientation:reverse strand
Alignment:YCCTCTSTGTTCAGAR----
---NSTGTTTRCWCAGBNNN
 A G T C A G T C A G T C A C G T A G T C A G C T A T C G C G A T A C T G C A G T A C G T A G T C C G T A T A C G C T G A C T G A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T G A C T A T G C A C G T C T A G C G A T C A G T C A G T T C G A G A T C G C T A A G T C C G T A T C A G A T G C T A G C G A C T T A C G

Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer

Match Rank:7
Score:0.48
Offset:1
Orientation:forward strand
Alignment:YCCTCTSTGTTCAGAR
-CCATTGTATGCAAAT
 A G T C A G T C A G T C A C G T A G T C A G C T A T C G C G A T A C T G C A G T A C G T A G T C C G T A T A C G C T G A C T G A
A C G T A G T C G A T C G C T A C G A T A C G T T A C G G C A T C T G A G A C T A C T G A G T C G C T A C T G A T C G A C A G T

PB0140.1_Irf6_2/Jaspar

Match Rank:8
Score:0.48
Offset:-2
Orientation:forward strand
Alignment:--YCCTCTSTGTTCAGAR
ACCACTCTCGGTCAC---
 A C G T A C G T A G T C A G T C A G T C A C G T A G T C A G C T A T C G C G A T A C T G C A G T A C G T A G T C C G T A T A C G C T G A C T G A
T G C A A G T C A G T C G C T A G T A C C A G T A T G C A G C T A G T C C T A G T C A G C A G T G A T C C T G A T A G C A C G T A C G T A C G T

SRF/MA0083.3/Jaspar

Match Rank:9
Score:0.48
Offset:-3
Orientation:reverse strand
Alignment:---YCCTCTSTGTTCAGAR
TGNCCATATATGGTCA---
 A C G T A C G T A C G T A G T C A G T C A G T C A C G T A G T C A G C T A T C G C G A T A C T G C A G T A C G T A G T C C G T A T A C G C T G A C T G A
G C A T A C T G G T C A G A T C A T G C C G T A C G A T T G C A A G C T G C T A G C A T T C A G A T C G C A G T T G A C C G T A A C G T A C G T A C G T

RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer

Match Rank:10
Score:0.47
Offset:2
Orientation:reverse strand
Alignment:YCCTCTSTGTTCAGAR
--NNHTGTGGTTWN--
 A G T C A G T C A G T C A C G T A G T C A G C T A T C G C G A T A C T G C A G T A C G T A G T C C G T A T A C G C T G A C T G A
A C G T A C G T C A T G C G A T G A C T A C G T A C T G A C G T A C T G A C T G A C G T A G C T C G A T A C T G A C G T A C G T