Information for 5-GCCAGCSCWGTSSRAG (Motif 7)

A C T G A G T C A G T C C G T A A C T G A G T C T A C G A G T C C G A T A C T G A C G T A T G C T A C G T C A G C T G A A C T G
Reverse Opposite:
A G T C A G C T A G C T A T C G A T C G C G T A A G T C C G T A A C T G A T C G A C T G A G T C A C G T A C T G A C T G A G T C
p-value:1e-5
log p-value:-1.368e+01
Information Content per bp:1.855
Number of Target Sequences with motif2.0
Percentage of Target Sequences with motif2.78%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets40.0 +/- 26.0bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFIX/MA0671.1/Jaspar

Match Rank:1
Score:0.54
Offset:-3
Orientation:forward strand
Alignment:---GCCAGCSCWGTSSRAG
CGTGCCAAG----------
 A C G T A C G T A C G T A C T G A G T C A G T C C G T A A C T G A G T C T A C G A G T C C G A T A C T G A C G T A T G C T A C G T C A G C T G A A C T G
T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Hic1/MA0739.1/Jaspar

Match Rank:2
Score:0.53
Offset:-2
Orientation:forward strand
Alignment:--GCCAGCSCWGTSSRAG
ATGCCAACC---------
 A C G T A C G T A C T G A G T C A G T C C G T A A C T G A G T C T A C G A G T C C G A T A C T G A C G T A T G C T A C G T C A G C T G A A C T G
T C G A A G C T T C A G T A G C G T A C G T C A T C G A A T G C A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

NFIC/MA0161.1/Jaspar

Match Rank:3
Score:0.53
Offset:-1
Orientation:reverse strand
Alignment:-GCCAGCSCWGTSSRAG
TGCCAA-----------
 A C G T A C T G A G T C A G T C C G T A A C T G A G T C T A C G A G T C C G A T A C T G A C G T A T G C T A C G T C A G C T G A A C T G
G C A T C A T G G A T C A G T C G T C A C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

POL010.1_DCE_S_III/Jaspar

Match Rank:4
Score:0.53
Offset:2
Orientation:forward strand
Alignment:GCCAGCSCWGTSSRAG
--CAGCC---------
 A C T G A G T C A G T C C G T A A C T G A G T C T A C G A G T C C G A T A C T G A C G T A T G C T A C G T C A G C T G A A C T G
A C G T A C G T T A G C C G T A A C T G A G T C A T G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer

Match Rank:5
Score:0.52
Offset:-2
Orientation:reverse strand
Alignment:--GCCAGCSCWGTSSRAG
GCGCATGCGCAG------
 A C G T A C G T A C T G A G T C A G T C C G T A A C T G A G T C T A C G A G T C C G A T A C T G A C G T A T G C T A C G T C A G C T G A A C T G
T C A G T G A C C T A G T A G C T G C A A C G T T A C G A G T C A C T G A G T C T C G A T A C G A C G T A C G T A C G T A C G T A C G T A C G T

NRF1/MA0506.1/Jaspar

Match Rank:6
Score:0.51
Offset:-2
Orientation:forward strand
Alignment:--GCCAGCSCWGTSSRAG
GCGCCTGCGCA-------
 A C G T A C G T A C T G A G T C A G T C C G T A A C T G A G T C T A C G A G T C C G A T A C T G A C G T A T G C T A C G T C A G C T G A A C T G
T C A G G T A C T C A G A T G C T G A C A C G T A C T G A G T C A T C G G T A C T C G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:7
Score:0.50
Offset:-2
Orientation:reverse strand
Alignment:--GCCAGCSCWGTSSRAG
ATGCCAGACN--------
 A C G T A C G T A C T G A G T C A G T C C G T A A C T G A G T C T A C G A G T C C G A T A C T G A C G T A T G C T A C G T C A G C T G A A C T G
C G T A G C A T C A T G T A G C A G T C C G T A C T A G C G T A G A T C T A G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0029.1_Hic1_1/Jaspar

Match Rank:8
Score:0.50
Offset:-5
Orientation:forward strand
Alignment:-----GCCAGCSCWGTSSRAG
ACTATGCCAACCTACC-----
 A C G T A C G T A C G T A C G T A C G T A C T G A G T C A G T C C G T A A C T G A G T C T A C G A G T C C G A T A C T G A C G T A T G C T A C G T C A G C T G A A C T G
C G T A A G T C A C G T C T G A A C G T C T A G A T G C A G T C G T C A T G C A A G T C A G T C G C A T C T G A G A T C G A T C A C G T A C G T A C G T A C G T A C G T

POL009.1_DCE_S_II/Jaspar

Match Rank:9
Score:0.49
Offset:6
Orientation:forward strand
Alignment:GCCAGCSCWGTSSRAG
------GCTGTG----
 A C T G A G T C A G T C C G T A A C T G A G T C T A C G A G T C C G A T A C T G A C G T A T G C T A C G T C A G C T G A A C T G
A C G T A C G T A C G T A C G T A C G T A C G T T A C G T A G C C A G T A T C G G A C T A T C G A C G T A C G T A C G T A C G T

Mafb/MA0117.2/Jaspar

Match Rank:10
Score:0.49
Offset:-1
Orientation:reverse strand
Alignment:-GCCAGCSCWGTSSRAG
NGTCAGCANTTT-----
 A C G T A C T G A G T C A G T C C G T A A C T G A G T C T A C G A G T C C G A T A C T G A C G T A T G C T A C G T C A G C T G A A C T G
G T C A T A C G A G C T G T A C C T G A C A T G T A G C C T G A G C A T C G A T G C A T G C A T A C G T A C G T A C G T A C G T A C G T