Information for 1-KCCCCCCAGCAMASCC (Motif 2)

A C G T G T A C G T A C T A G C G T A C G T A C A G T C G T C A A C T G A G T C C G T A G T C A G T C A A T C G A T G C A G T C
Reverse Opposite:
T C A G A T C G A T G C A C G T A C G T G A C T A C T G T G A C C A G T C T A G C A T G A C T G A C T G A C T G C A T G G T C A
p-value:1e-12
log p-value:-2.887e+01
Information Content per bp:1.669
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif11.11%
Number of Background Sequences with motif71.1
Percentage of Background Sequences with motif0.15%
Average Position of motif in Targets55.6 +/- 25.0bp
Average Position of motif in Background46.4 +/- 32.1bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0056.1_Rfxdc2_1/Jaspar

Match Rank:1
Score:0.64
Offset:1
Orientation:forward strand
Alignment:KCCCCCCAGCAMASCC
-CCGCATAGCAACGGA
 A C G T G T A C G T A C T A G C G T A C G T A C A G T C G T C A A C T G A G T C C G T A G T C A G T C A A T C G A T G C A G T C
A C G T A G T C A G T C T A C G A T G C G C T A G A C T T C G A C T A G G A T C C T G A T C G A A G T C T A C G T C A G C T G A

PB0055.1_Rfx4_1/Jaspar

Match Rank:2
Score:0.64
Offset:1
Orientation:forward strand
Alignment:KCCCCCCAGCAMASCC
-TACCATAGCAACGGT
 A C G T G T A C G T A C T A G C G T A C G T A C A G T C G T C A A C T G A G T C C G T A G T C A G T C A A T C G A T G C A G T C
A C G T A G C T G T C A T A G C A T G C G T C A A G C T T C G A C T A G G A T C C T G A C T G A A G T C T A C G T C A G C G A T

PB0054.1_Rfx3_1/Jaspar

Match Rank:3
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---KCCCCCCAGCAMASCC----
TGTGACCCTTAGCAACCGATTAA
 A C G T A C G T A C G T A C G T G T A C G T A C T A G C G T A C G T A C A G T C G T C A A C T G A G T C C G T A G T C A G T C A A T C G A T G C A G T C A C G T A C G T A C G T A C G T
G A C T C A T G A G C T A T C G G T C A G A T C T G A C A T G C G A C T A G C T T C G A C T A G G A T C C T G A C G T A A G T C T A G C T C A G C G T A G C A T G C A T G C T A G C T A

RREB1/MA0073.1/Jaspar

Match Rank:4
Score:0.62
Offset:1
Orientation:forward strand
Alignment:KCCCCCCAGCAMASCC-----
-CCCCAAACCACCCCCCCCCA
 A C G T G T A C G T A C T A G C G T A C G T A C A G T C G T C A A C T G A G T C C G T A G T C A G T C A A T C G A T G C A G T C A C G T A C G T A C G T A C G T A C G T
A C G T G T A C G T A C G T A C A G T C G T C A G T C A G T C A G T A C A G T C C G T A G T A C G T A C G T A C T G A C G T A C G T A C G T A C G T A C T A G C T G A C

GLIS2/MA0736.1/Jaspar

Match Rank:5
Score:0.61
Offset:0
Orientation:forward strand
Alignment:KCCCCCCAGCAMASCC
GACCCCCCGCGAAG--
 A C G T G T A C G T A C T A G C G T A C G T A C A G T C G T C A A C T G A G T C C G T A G T C A G T C A A T C G A T G C A G T C
A C T G T C G A A G T C G T A C G A T C G T A C G T A C G A T C C T A G A G T C C T A G C T G A G T C A A T C G A C G T A C G T

INSM1/MA0155.1/Jaspar

Match Rank:6
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-KCCCCCCAGCAMASCC
CGCCCCCTGACA-----
 A C G T A C G T G T A C G T A C T A G C G T A C G T A C A G T C G T C A A C T G A G T C C G T A G T C A G T C A A T C G A T G C A G T C
G A T C C T A G T G A C A G T C A G T C A T G C A G T C C G A T C A T G T C G A G T A C G T C A A C G T A C G T A C G T A C G T A C G T

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:7
Score:0.55
Offset:3
Orientation:forward strand
Alignment:KCCCCCCAGCAMASCC
---SCCTAGCAACAG-
 A C G T G T A C G T A C T A G C G T A C G T A C A G T C G T C A A C T G A G T C C G T A G T C A G T C A A T C G A T G C A G T C
A C G T A C G T A C G T A T G C A G T C G T A C A G C T T C G A C T A G G A T C C T G A G T C A A G T C G C T A T C A G A C G T

Rfx6(HTH)/Min6b1-Rfx6.HA-ChIP-Seq(GSE62844)/Homer

Match Rank:8
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-KCCCCCCAGCAMASCC
TGTTKCCTAGCAACM--
 A C G T A C G T G T A C G T A C T A G C G T A C G T A C A G T C G T C A A C T G A G T C C G T A G T C A G T C A A T C G A T G C A G T C
C A G T T C A G A G C T G A C T A C G T A G T C G A T C G A C T C T G A A C T G G A T C C G T A C T G A A G T C G T A C A C G T A C G T

PB0205.1_Zic1_2/Jaspar

Match Rank:9
Score:0.54
Offset:1
Orientation:forward strand
Alignment:KCCCCCCAGCAMASCC
-CCACACAGCAGGAGA
 A C G T G T A C G T A C T A G C G T A C G T A C A G T C G T C A A C T G A G T C C G T A G T C A G T C A A T C G A T G C A G T C
A C G T A G T C G T A C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A

Rfx1/MA0509.1/Jaspar

Match Rank:10
Score:0.53
Offset:-1
Orientation:forward strand
Alignment:-KCCCCCCAGCAMASCC
GTTGCCATGGCAAC---
 A C G T A C G T G T A C G T A C T A G C G T A C G T A C A G T C G T C A A C T G A G T C C G T A G T C A G T C A A T C G A T G C A G T C
C T A G A C G T G A C T A C T G A G T C A G T C G C T A G C A T C T A G C T A G G T A C C T G A C T G A A G T C A C G T A C G T A C G T