Information for 19-GCCTCTCAGATCT (Motif 23)

A C T G A G T C A G T C A C G T A G T C A C G T A T G C C G T A A C T G C T G A A C G T G T A C A C G T
Reverse Opposite:
C G T A A C T G G T C A A G C T A G T C A C G T A T C G C G T A A C T G C G T A A C T G C T A G A G T C
p-value:1e-8
log p-value:-1.873e+01
Information Content per bp:1.880
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.66%
Number of Background Sequences with motif4.7
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets61.0 +/- 19.9bp
Average Position of motif in Background63.5 +/- 20.2bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nkx2-5(var.2)/MA0503.1/Jaspar

Match Rank:1
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-GCCTCTCAGATCT
AGCCACTCAAG---
 A C G T A C T G A G T C A G T C A C G T A G T C A C G T A T G C C G T A A C T G C T G A A C G T G T A C A C G T
C T G A C T A G T A G C A G T C G C T A A G T C A C G T A G T C G T C A C T G A T A C G A C G T A C G T A C G T

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:2
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-GCCTCTCAGATCT
AASCACTCAA----
 A C G T A C T G A G T C A G T C A C G T A G T C A C G T A T G C C G T A A C T G C T G A A C G T G T A C A C G T
C T G A C T G A T A G C G A T C G C T A G T A C A C G T G A T C T G C A C G T A A C G T A C G T A C G T A C G T

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:3
Score:0.54
Offset:-3
Orientation:forward strand
Alignment:---GCCTCTCAGATCT
SCTGTCAVTCAV----
 A C G T A C G T A C G T A C T G A G T C A G T C A C G T A G T C A C G T A T G C C G T A A C T G C T G A A C G T G T A C A C G T
T A C G A T G C G A C T A C T G A G C T A G T C G T C A T G C A A C G T A G T C G C T A T G C A A C G T A C G T A C G T A C G T

STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer

Match Rank:4
Score:0.52
Offset:1
Orientation:reverse strand
Alignment:GCCTCTCAGATCT
-TTTCTNAGAAAN
 A C T G A G T C A G T C A C G T A G T C A C G T A T G C C G T A A C T G C T G A A C G T G T A C A C G T
A C G T A G C T A C G T A C G T A G T C G A C T G C T A C T G A A C T G C G T A C G T A T G C A G A C T

MEIS2/MA0774.1/Jaspar

Match Rank:5
Score:0.52
Offset:1
Orientation:reverse strand
Alignment:GCCTCTCAGATCT
-GCTGTCAA----
 A C T G A G T C A G T C A C G T A G T C A C G T A T G C C G T A A C T G C T G A A C G T G T A C A C G T
A C G T A T C G A T G C A C G T C A T G G C A T A G T C G T C A G C T A A C G T A C G T A C G T A C G T

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:6
Score:0.51
Offset:-2
Orientation:forward strand
Alignment:--GCCTCTCAGATCT
CTGTCTGTCACCT--
 A C G T A C G T A C T G A G T C A G T C A C G T A G T C A C G T A T G C C G T A A C T G C T G A A C G T G T A C A C G T
T A G C G C A T T C A G A C G T A G T C A C G T T A C G C A G T A T G C G C T A T A G C G A T C G A C T A C G T A C G T

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:7
Score:0.51
Offset:-3
Orientation:forward strand
Alignment:---GCCTCTCAGATCT
NCTGTCAATCAN----
 A C G T A C G T A C G T A C T G A G T C A G T C A C G T A G T C A C G T A T G C C G T A A C T G C T G A A C G T G T A C A C G T
T A G C T A G C G A C T C T A G A G C T A G T C G T C A T G C A A C G T A T G C G C T A T G C A A C G T A C G T A C G T A C G T

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:8
Score:0.50
Offset:-1
Orientation:reverse strand
Alignment:-GCCTCTCAGATCT
TGTCTGDCACCT--
 A C G T A C T G A G T C A G T C A C G T A G T C A C G T A T G C C G T A A C T G C T G A A C G T G T A C A C G T
G C A T A C T G C G A T A G T C A C G T T A C G C A T G A G T C C G T A T A G C G A T C G A C T A C G T A C G T

Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer

Match Rank:9
Score:0.50
Offset:0
Orientation:forward strand
Alignment:GCCTCTCAGATCT
RSCACTYRAG---
 A C T G A G T C A G T C A C G T A G T C A C G T A T G C C G T A A C T G C T G A A C G T G T A C A C G T
C T A G T A C G A G T C C G T A A G T C A C G T A G T C T C G A C G T A T A C G A C G T A C G T A C G T

Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer

Match Rank:10
Score:0.50
Offset:0
Orientation:reverse strand
Alignment:GCCTCTCAGATCT
NSCACTYVAV---
 A C T G A G T C A G T C A C G T A G T C A C G T A T G C C G T A A C T G C T G A A C G T G T A C A C G T
C T A G T A G C A G T C G C T A G A T C A C G T G A T C T C G A C T G A T A C G A C G T A C G T A C G T