Information for 4-GCGATGTTAG (Motif 7)

A C T G A G T C T C A G C G T A A C G T A C T G A C G T A C G T C T G A A C T G
Reverse Opposite:
A G T C A G C T C G T A C G T A A G T C G T C A A C G T A G T C A C T G G T A C
p-value:1e-10
log p-value:-2.523e+01
Information Content per bp:1.880
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif0.92%
Number of Background Sequences with motif9.0
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets43.1 +/- 28.2bp
Average Position of motif in Background44.0 +/- 23.0bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

YY1/MA0095.2/Jaspar

Match Rank:1
Score:0.63
Offset:-3
Orientation:reverse strand
Alignment:---GCGATGTTAG
GCNGCCATCTTG-
 A C G T A C G T A C G T A C T G A G T C T C A G C G T A A C G T A C T G A C G T A C G T C T G A A C T G
C A T G A G T C T G A C C A T G A G T C A G T C C T G A A C G T A G T C A G C T G A C T A C T G A C G T

Arid5a/MA0602.1/Jaspar

Match Rank:2
Score:0.60
Offset:-4
Orientation:reverse strand
Alignment:----GCGATGTTAG
NNTNNCAATATTAG
 A C G T A C G T A C G T A C G T A C T G A G T C T C A G C G T A A C G T A C T G A C G T A C G T C T G A A C T G
C G A T G C A T G A C T G C T A A C T G G A T C C T G A C G T A C G A T G C T A G C A T G A C T C T G A A T C G

PB0002.1_Arid5a_1/Jaspar

Match Rank:3
Score:0.60
Offset:-4
Orientation:reverse strand
Alignment:----GCGATGTTAG
NNTNNCAATATTAG
 A C G T A C G T A C G T A C G T A C T G A G T C T C A G C G T A A C G T A C T G A C G T A C G T C T G A A C T G
C G A T G C A T G A C T G C T A A C T G G A T C C T G A C G T A C G A T G C T A G C A T G A C T C T G A A T C G

YY1(Zf)/Promoter/Homer

Match Rank:4
Score:0.57
Offset:-3
Orientation:reverse strand
Alignment:---GCGATGTTAG
GCCGCCATCTTG-
 A C G T A C G T A C G T A C T G A G T C T C A G C G T A A C G T A C T G A C G T A C G T C T G A A C T G
C A T G G A T C A T G C C T A G A G T C A G T C C G T A A C G T A T G C A G C T A C G T A T C G A C G T

PB0121.1_Foxj3_2/Jaspar

Match Rank:5
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-GCGATGTTAG------
NNCTTTGTTTTGNTNNN
 A C G T A C T G A G T C T C A G C G T A A C G T A C T G A C G T A C G T C T G A A C T G A C G T A C G T A C G T A C G T A C G T A C G T
G C A T A T G C G T A C C G A T G C A T C G A T C T A G C G A T C A G T C G A T A C G T C T A G C A T G G A C T T A C G G C A T A C G T

SD0001.1_at_AC_acceptor/Jaspar

Match Rank:6
Score:0.56
Offset:2
Orientation:forward strand
Alignment:GCGATGTTAG---
--CAGGTAAGTAT
 A C T G A G T C T C A G C G T A A C G T A C T G A C G T A C G T C T G A A C T G A C G T A C G T A C G T
A C G T A C G T T G A C C G T A C T A G A C T G A C G T C T G A C G T A C T A G C G A T C T G A G A C T

Rhox11/MA0629.1/Jaspar

Match Rank:7
Score:0.55
Offset:-3
Orientation:forward strand
Alignment:---GCGATGTTAG----
AAGACGCTGTAAAGCGA
 A C G T A C G T A C G T A C T G A G T C T C A G C G T A A C G T A C T G A C G T A C G T C T G A A C T G A C G T A C G T A C G T A C G T
C G T A T G C A C A T G T G C A G A T C C T A G T A G C C A G T C T A G G A C T C G T A G C T A G C T A C T A G T A G C T C A G G C T A

PH0157.1_Rhox11_1/Jaspar

Match Rank:8
Score:0.55
Offset:-3
Orientation:forward strand
Alignment:---GCGATGTTAG----
AAGACGCTGTAAAGCGA
 A C G T A C G T A C G T A C T G A G T C T C A G C G T A A C G T A C T G A C G T A C G T C T G A A C T G A C G T A C G T A C G T A C G T
C G T A T G C A C A T G T G C A G A T C C T A G T A G C C A G T C T A G G A C T C G T A G C T A G C T A C T A G T A G C T C A G G C T A

PH0158.1_Rhox11_2/Jaspar

Match Rank:9
Score:0.54
Offset:-3
Orientation:forward strand
Alignment:---GCGATGTTAG----
AGGACGCTGTAAAGGGA
 A C G T A C G T A C G T A C T G A G T C T C A G C G T A A C G T A C T G A C G T A C G T C T G A A C T G A C G T A C G T A C G T A C G T
C G T A T C A G C A T G G T C A G A T C C T A G T A G C C A G T C T A G G A C T G C T A C G T A G C T A C T A G T A C G T C A G G C T A

PB0119.1_Foxa2_2/Jaspar

Match Rank:10
Score:0.53
Offset:-1
Orientation:reverse strand
Alignment:-GCGATGTTAG----
NCNTTTGTTATTTNN
 A C G T A C T G A G T C T C A G C G T A A C G T A C T G A C G T A C G T C T G A A C T G A C G T A C G T A C G T A C G T
A T G C A T G C A T C G A G C T C A G T C A G T C T A G G C A T G A C T T C G A C A G T G A C T G C A T A G C T A G C T