Information for 1-GCAAACCCCA (Motif 3)

T C A G A G T C G T C A C G T A C G T A A G T C A T G C G T A C T G A C C G T A
Reverse Opposite:
C G A T A C T G C A T G A T C G C T A G A C G T A C G T A C G T A C T G A G T C
p-value:1e-14
log p-value:-3.386e+01
Information Content per bp:1.863
Number of Target Sequences with motif22.0
Percentage of Target Sequences with motif2.53%
Number of Background Sequences with motif118.6
Percentage of Background Sequences with motif0.25%
Average Position of motif in Targets56.6 +/- 26.5bp
Average Position of motif in Background49.5 +/- 26.2bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.05
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer

Match Rank:1
Score:0.72
Offset:1
Orientation:forward strand
Alignment:GCAAACCCCA-
-NAAACCACAG
 T C A G A G T C G T C A C G T A C G T A A G T C A T G C G T A C T G A C C G T A A C G T
A C G T T A G C G C T A T C G A C T G A A G T C A G T C C T G A A G T C C G T A C T A G

RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer

Match Rank:2
Score:0.72
Offset:2
Orientation:forward strand
Alignment:GCAAACCCCA--
--AAACCACANN
 T C A G A G T C G T C A C G T A C G T A A G T C A T G C G T A C T G A C C G T A A C G T A C G T
A C G T A C G T G C T A C T G A T C G A A G T C A G T C C T G A A G T C G T C A C T G A T G C A

RUNX2/MA0511.2/Jaspar

Match Rank:3
Score:0.70
Offset:2
Orientation:forward strand
Alignment:GCAAACCCCA-
--AAACCGCAA
 T C A G A G T C G T C A C G T A C G T A A G T C A T G C G T A C T G A C C G T A A C G T
A C G T A C G T G C T A C T G A G T C A A G T C A G T C C T A G A G T C T G C A T C G A

RUNX3/MA0684.1/Jaspar

Match Rank:4
Score:0.70
Offset:2
Orientation:forward strand
Alignment:GCAAACCCCA--
--AAACCGCAAA
 T C A G A G T C G T C A C G T A C G T A A G T C A T G C G T A C T G A C C G T A A C G T A C G T
A C G T A C G T G C T A T C G A T G C A G T A C A T G C T C A G A T G C T G C A T C G A G C T A

RUNX1/MA0002.2/Jaspar

Match Rank:5
Score:0.68
Offset:2
Orientation:reverse strand
Alignment:GCAAACCCCA---
--AAACCACAGAN
 T C A G A G T C G T C A C G T A C G T A A G T C A T G C G T A C T G A C C G T A A C G T A C G T A C G T
A C G T A C G T G C T A C T G A T C G A T G A C G T A C C T G A T A G C G C T A T C A G T C G A T G A C

RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:6
Score:0.66
Offset:2
Orientation:reverse strand
Alignment:GCAAACCCCA--
--AAACCACAGC
 T C A G A G T C G T C A C G T A C G T A A G T C A T G C G T A C T G A C C G T A A C G T A C G T
A C G T A C G T G C T A T C G A T G C A T G A C G T A C T G C A A G T C C T G A C T A G T G A C

RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer

Match Rank:7
Score:0.65
Offset:1
Orientation:forward strand
Alignment:GCAAACCCCA---
-NWAACCACADNN
 T C A G A G T C G T C A C G T A C G T A A G T C A T G C G T A C T G A C C G T A A C G T A C G T A C G T
A C G T T G A C G C T A T C G A T G C A A G T C A G T C C G T A A G T C C G T A C T G A G C T A G T A C

MF0003.1_REL_class/Jaspar

Match Rank:8
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-GCAAACCCCA
GGAAATCCCC-
 A C G T T C A G A G T C G T C A C G T A C G T A A G T C A T G C G T A C T G A C C G T A
C A T G C T A G C T G A T C G A G C T A C G A T G A T C G T A C T G A C T A G C A C G T

REL/MA0101.1/Jaspar

Match Rank:9
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:GCAAACCCCA
GGAAANCCCC
 T C A G A G T C G T C A C G T A C G T A A G T C A T G C G T A C T G A C C G T A
A C T G C T A G C G T A C G T A C G T A A C G T G A T C G A T C T A G C T A G C

RELA/MA0107.1/Jaspar

Match Rank:10
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:GCAAACCCCA
GGAAATTCCC
 T C A G A G T C G T C A C G T A C G T A A G T C A T G C G T A C T G A C C G T A
A C T G A C T G C T G A C G T A C G T A A G C T A G C T A G T C G T A C T A G C