Information for 17-TGACCCTGCTGTC (Motif 38)

C G A T A C T G C G T A A G T C G T A C A G T C A C G T A C T G A G T C A C G T A C T G A C G T A G T C
Reverse Opposite:
C T A G C G T A A G T C C G T A A C T G A G T C C G T A C T A G A C T G A C T G C G A T A G T C C G T A
p-value:1e-7
log p-value:-1.741e+01
Information Content per bp:1.927
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.56%
Number of Background Sequences with motif4.1
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets49.6 +/- 26.8bp
Average Position of motif in Background58.5 +/- 25.0bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:1
Score:0.68
Offset:1
Orientation:reverse strand
Alignment:TGACCCTGCTGTC
-CCCCCTGCTGTG
 C G A T A C T G C G T A A G T C G T A C A G T C A C G T A C T G A G T C A C G T A C T G A C G T A G T C
A C G T G A T C G A T C G A T C G T A C G T A C G C A T C T A G A G T C G C A T A C T G C G A T A C T G

PB0157.1_Rara_2/Jaspar

Match Rank:2
Score:0.65
Offset:-4
Orientation:reverse strand
Alignment:----TGACCCTGCTGTC
NNCNTGACCCCGCTCT-
 A C G T A C G T A C G T A C G T C G A T A C T G C G T A A G T C G T A C A G T C A C G T A C T G A G T C A C G T A C T G A C G T A G T C
A C G T T G C A T G A C C A G T G A C T T C A G C G T A G T A C G T A C A T G C T A G C T C A G G T A C C A G T G T A C C A G T A C G T

PH0169.1_Tgif1/Jaspar

Match Rank:3
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:TGACCCTGCTGTC------
--NNNCAGCTGTCAATATN
 C G A T A C T G C G T A A G T C G T A C A G T C A C G T A C T G A G T C A C G T A C T G A C G T A G T C A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T G C T A T G A C A T C G A T G C T G C A A T C G G A T C A G C T A C T G C G A T A G T C C G T A G C T A C G A T T G C A G A C T G T A C

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:4
Score:0.61
Offset:4
Orientation:forward strand
Alignment:TGACCCTGCTGTC-
----CCTGCTGAGH
 C G A T A C T G C G T A A G T C G T A C A G T C A C G T A C T G A G T C A C G T A C T G A C G T A G T C A C G T
A C G T A C G T A C G T A C G T A G T C G T A C A G C T C T A G A G T C C G A T A C T G C G T A A C T G G T C A

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:5
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-TGACCCTGCTGTC-
GGCCYCCTGCTGDGH
 A C G T C G A T A C T G C G T A A G T C G T A C A G T C A C G T A C T G A G T C A C G T A C T G A C G T A G T C A C G T
C A T G T A C G T A G C G A T C G A T C A T G C G T A C G A C T T C A G A T G C C G A T A T C G C A G T A C T G G T A C

PB0207.1_Zic3_2/Jaspar

Match Rank:6
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:TGACCCTGCTGTC---
-NNTCCTGCTGTGNNN
 C G A T A C T G C G T A A G T C G T A C A G T C A C G T A C T G A G T C A C G T A C T G A C G T A G T C A C G T A C G T A C G T
A C G T G C A T A T C G C A G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G G A C T A C T G G A T C G C A T G T A C

MEIS2/MA0774.1/Jaspar

Match Rank:7
Score:0.60
Offset:7
Orientation:reverse strand
Alignment:TGACCCTGCTGTC--
-------GCTGTCAA
 C G A T A C T G C G T A A G T C G T A C A G T C A C G T A C T G A G T C A C G T A C T G A C G T A G T C A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T C G A T G C A C G T C A T G G C A T A G T C G T C A G C T A

MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer

Match Rank:8
Score:0.60
Offset:5
Orientation:reverse strand
Alignment:TGACCCTGCTGTC
-----CAGCTGTT
 C G A T A C T G C G T A A G T C G T A C A G T C A C G T A C T G A G T C A C G T A C T G A C G T A G T C
A C G T A C G T A C G T A C G T A C G T A G T C C G T A A T C G A G T C A C G T A C T G A G C T A G C T

Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer

Match Rank:9
Score:0.60
Offset:4
Orientation:reverse strand
Alignment:TGACCCTGCTGTC-
----CCAGCTGTTN
 C G A T A C T G C G T A A G T C G T A C A G T C A C G T A C T G A G T C A C G T A C T G A C G T A G T C A C G T
A C G T A C G T A C G T A C G T T G A C G T A C C T G A A C T G T G A C G C A T C A T G A C G T A C G T G C T A

PB0153.1_Nr2f2_2/Jaspar

Match Rank:10
Score:0.59
Offset:-4
Orientation:reverse strand
Alignment:----TGACCCTGCTGTC
NNNNTGACCCGGCGCG-
 A C G T A C G T A C G T A C G T C G A T A C T G C G T A A G T C G T A C A G T C A C G T A C T G A G T C A C G T A C T G A C G T A G T C
C G A T T C G A T A G C A T C G A G C T T C A G G T C A G T A C G T A C A G T C T A C G T C A G G T A C A C T G G T A C A C T G A C G T