Information for 2-TRTTTGCATTTCGGTG (Motif 2)

A C G T C T G A C G A T A C G T C G A T C A T G A G T C G T C A C A G T C G A T A C G T A G T C C T A G A C T G C G A T T A C G
Reverse Opposite:
A G T C C G T A A G T C G A T C C T A G T G C A C G T A G C T A A C G T A C T G G A T C C G T A G T C A C G T A A G C T G T C A
p-value:1e-13
log p-value:-3.027e+01
Information Content per bp:1.684
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif2.63%
Number of Background Sequences with motif13.2
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets58.4 +/- 20.1bp
Average Position of motif in Background34.8 +/- 16.0bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

FOXA1/MA0148.3/Jaspar

Match Rank:1
Score:0.63
Offset:-4
Orientation:forward strand
Alignment:----TRTTTGCATTTCGGTG
TCCATGTTTACTTTG-----
 A C G T A C G T A C G T A C G T A C G T C T G A C G A T A C G T C G A T C A T G A G T C G T C A C A G T C G A T A C G T A G T C C T A G A C T G C G A T T A C G
G A C T A G T C A T G C G C T A C G A T C T A G A C G T A C G T A C G T C T G A A G T C G C A T A G C T C G A T C A T G A C G T A C G T A C G T A C G T A C G T

Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer

Match Rank:2
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:TRTTTGCATTTCGGTG
-ATTTGCATAT-----
 A C G T C T G A C G A T A C G T C G A T C A T G A G T C G T C A C A G T C G A T A C G T A G T C C T A G A C T G C G A T T A C G
A C G T G C T A C G A T G A C T A C G T C T A G G A T C G T C A C G A T C G T A C A G T A C G T A C G T A C G T A C G T A C G T

FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer

Match Rank:3
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:TRTTTGCATTTCGGTG
TGTTTACTTT------
 A C G T C T G A C G A T A C G T C G A T C A T G A G T C G T C A C A G T C G A T A C G T A G T C C T A G A C T G C G A T T A C G
A C G T C T A G A C G T A C G T A C G T C T G A A G T C G C A T A G C T C G A T A C G T A C G T A C G T A C G T A C G T A C G T

FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer

Match Rank:4
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:TRTTTGCATTTCGGTG
TGTTTACTTT------
 A C G T C T G A C G A T A C G T C G A T C A T G A G T C G T C A C A G T C G A T A C G T A G T C C T A G A C T G C G A T T A C G
A C G T C T A G A C G T A C G T A C G T C T G A A G T C G C A T A G C T C G A T A C G T A C G T A C G T A C G T A C G T A C G T

Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:5
Score:0.61
Offset:1
Orientation:forward strand
Alignment:TRTTTGCATTTCGGTG
-ATTTGCATAA-----
 A C G T C T G A C G A T A C G T C G A T C A T G A G T C G T C A C A G T C G A T A C G T A G T C C T A G A C T G C G A T T A C G
A C G T C G T A A C G T A G C T C G A T C T A G G T A C C G T A A G C T C G T A G C T A A C G T A C G T A C G T A C G T A C G T

POU2F2/MA0507.1/Jaspar

Match Rank:6
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--TRTTTGCATTTCGGTG
TTCATTTGCATAT-----
 A C G T A C G T A C G T C T G A C G A T A C G T C G A T C A T G A G T C G T C A C A G T C G A T A C G T A G T C C T A G A C T G C G A T T A C G
G A C T C A G T G T A C G C T A A C G T G C A T A C G T C T A G A G T C G T C A A G C T C T G A G C A T A C G T A C G T A C G T A C G T A C G T

FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer

Match Rank:7
Score:0.61
Offset:0
Orientation:forward strand
Alignment:TRTTTGCATTTCGGTG
TRTTTACTTW------
 A C G T C T G A C G A T A C G T C G A T C A T G A G T C G T C A C A G T C G A T A C G T A G T C C T A G A C T G C G A T T A C G
A C G T C T A G A G C T A C G T A C G T C T G A A G T C G A C T A G C T C G T A A C G T A C G T A C G T A C G T A C G T A C G T

FOXB1/MA0845.1/Jaspar

Match Rank:8
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-TRTTTGCATTTCGGTG
ATATTTACATA------
 A C G T A C G T C T G A C G A T A C G T C G A T C A T G A G T C G T C A C A G T C G A T A C G T A G T C C T A G A C T G C G A T T A C G
C G T A G A C T T C G A C G A T C G A T A C G T C T G A G A T C G C T A G A C T C G T A A C G T A C G T A C G T A C G T A C G T A C G T

Foxk1/MA0852.1/Jaspar

Match Rank:9
Score:0.60
Offset:-5
Orientation:reverse strand
Alignment:-----TRTTTGCATTTCGGTG
NNNTTTGTTTACATTTN----
 A C G T A C G T A C G T A C G T A C G T A C G T C T G A C G A T A C G T C G A T C A T G A G T C G T C A C A G T C G A T A C G T A G T C C T A G A C T G C G A T T A C G
T A G C A G C T A T C G G C A T C G A T A C G T C T A G A C G T C G A T A C G T C G T A A G T C G T C A G C A T G C A T G A C T G C A T A C G T A C G T A C G T A C G T

PB0018.1_Foxk1_1/Jaspar

Match Rank:10
Score:0.60
Offset:-5
Orientation:reverse strand
Alignment:-----TRTTTGCATTTCGGTG
NNNTTTGTTTACATTTN----
 A C G T A C G T A C G T A C G T A C G T A C G T C T G A C G A T A C G T C G A T C A T G A G T C G T C A C A G T C G A T A C G T A G T C C T A G A C T G C G A T T A C G
T A G C A G C T A T C G G C A T C G A T A C G T C T A G A C G T C G A T A C G T C G T A A G T C G T C A G C A T G C A T G A C T G C A T A C G T A C G T A C G T A C G T