Information for 8-GGCACTTAGAAAAGGC (Motif 12)

A C T G A C T G A G T C C G T A A G T C A C G T A C G T C G T A A C T G C G T A C G T A C G T A C G T A A C T G A C T G A G T C
Reverse Opposite:
A C T G A G T C A G T C A C G T A C G T A C G T A C G T A G T C A C G T C G T A C G T A A C T G A C G T A C T G A G T C A G T C
p-value:1e-6
log p-value:-1.394e+01
Information Content per bp:1.530
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif0.36%
Number of Background Sequences with motif1.1
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets46.8 +/- 27.1bp
Average Position of motif in Background61.6 +/- 6.0bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.33
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

ISL2/MA0914.1/Jaspar

Match Rank:1
Score:0.62
Offset:1
Orientation:forward strand
Alignment:GGCACTTAGAAAAGGC
-GCACTTAA-------
 A C T G A C T G A G T C C G T A A G T C A C G T A C G T C G T A A C T G C G T A C G T A C G T A C G T A A C T G A C T G A G T C
A C G T T A C G G A T C G C T A G T A C C G A T G A C T G C T A C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

NKX3-2/MA0122.2/Jaspar

Match Rank:2
Score:0.59
Offset:0
Orientation:forward strand
Alignment:GGCACTTAGAAAAGGC
ACCACTTAA-------
 A C T G A C T G A G T C C G T A A G T C A C G T A C G T C G T A A C T G C G T A C G T A C G T A C G T A A C T G A C T G A G T C
T C G A T A G C G A T C G C T A G T A C A G C T G A C T G C T A C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer

Match Rank:3
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-GGCACTTAGAAAAGGC
AAGCACTTAA-------
 A C G T A C T G A C T G A G T C C G T A A G T C A C G T A C G T C G T A A C T G C G T A C G T A C G T A C G T A A C T G A C T G A G T C
T C G A T C G A T A C G G A T C G T C A G T A C C G A T A G C T G T C A T G C A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer

Match Rank:4
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:GGCACTTAGAAAAGGC
-BCMATTAG-------
 A C T G A C T G A G T C C G T A A G T C A C G T A C G T C G T A A C T G C G T A C G T A C G T A C G T A A C T G A C T G A G T C
A C G T A C T G A G T C G T C A G T C A A C G T A G C T C G T A T C A G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Nkx3-1/MA0124.2/Jaspar

Match Rank:5
Score:0.57
Offset:0
Orientation:forward strand
Alignment:GGCACTTAGAAAAGGC
ACCACTTAA-------
 A C T G A C T G A G T C C G T A A G T C A C G T A C G T C G T A A C T G C G T A C G T A C G T A C G T A A C T G A C T G A G T C
T C G A T A G C A G T C G C T A G T A C A G C T A G C T G C T A C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PH0004.1_Nkx3-2/Jaspar

Match Rank:6
Score:0.55
Offset:-4
Orientation:forward strand
Alignment:----GGCACTTAGAAAAGGC
CATAACCACTTAACAAC---
 A C G T A C G T A C G T A C G T A C T G A C T G A G T C C G T A A G T C A C G T A C G T C G T A A C T G C G T A C G T A C G T A C G T A A C T G A C T G A G T C
T G A C G C T A C G A T T C G A G C T A T A G C A G T C C G T A G T A C A G C T A G C T G C T A C G T A T A G C T G C A G T C A G A T C A C G T A C G T A C G T

Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer

Match Rank:7
Score:0.54
Offset:-1
Orientation:reverse strand
Alignment:-GGCACTTAGAAAAGGC
MRSCACTYAA-------
 A C G T A C T G A C T G A G T C C G T A A G T C A C G T A C G T C G T A A C T G C G T A C G T A C G T A C G T A A C T G A C T G A G T C
G T C A C T G A T A G C A G T C C G T A G T A C G C A T A G T C C T G A T C G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

NKX2-3/MA0672.1/Jaspar

Match Rank:8
Score:0.53
Offset:0
Orientation:forward strand
Alignment:GGCACTTAGAAAAGGC
ACCACTTGAA------
 A C T G A C T G A G T C C G T A A G T C A C G T A C G T C G T A A C T G C G T A C G T A C G T A C G T A A C T G A C T G A G T C
T G C A T A G C G A T C G C T A G T A C A C G T A G C T T C A G C G T A T C G A A C G T A C G T A C G T A C G T A C G T A C G T

Barhl1/MA0877.1/Jaspar

Match Rank:9
Score:0.52
Offset:0
Orientation:reverse strand
Alignment:GGCACTTAGAAAAGGC
NNCAATTANN------
 A C T G A C T G A G T C C G T A A G T C A C G T A C G T C G T A A C T G C G T A C G T A C G T A C G T A A C T G A C T G A G T C
T C G A T A C G G A T C T C G A G C T A G A C T G C A T C G T A C T A G T A G C A C G T A C G T A C G T A C G T A C G T A C G T

PB0048.1_Nkx3-1_1/Jaspar

Match Rank:10
Score:0.52
Offset:-4
Orientation:forward strand
Alignment:----GGCACTTAGAAAAGGC
CTTAACCACTTAAGGAT---
 A C G T A C G T A C G T A C G T A C T G A C T G A G T C C G T A A G T C A C G T A C G T C G T A A C T G C G T A C G T A C G T A C G T A A C T G A C T G A G T C
G T A C G C A T C G A T T C G A C T G A T A G C A G T C C G T A G T A C A C G T A G C T C G T A C G T A T A C G A C T G T C G A A C G T A C G T A C G T A C G T