Information for 9-AGTATCATAACAA (Motif 6)

C G T A A C T G A C G T C T G A A C G T A G T C G T C A A C G T C G T A C G T A A G T C C G T A C G T A
Reverse Opposite:
A C G T A C G T A C T G C G A T A C G T C G T A A C G T A C T G G T C A A G C T C G T A A G T C A C G T
p-value:1e-10
log p-value:-2.500e+01
Information Content per bp:1.933
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.59%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets28.6 +/- 23.4bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0120.1_Foxj1_2/Jaspar

Match Rank:1
Score:0.72
Offset:1
Orientation:forward strand
Alignment:AGTATCATAACAA---
-ATGTCACAACAACAC
 C G T A A C T G A C G T C T G A A C G T A G T C G T C A A C G T C G T A C G T A A G T C C G T A C G T A A C G T A C G T A C G T
A C G T C G T A A G C T T C A G A C G T T A G C T C G A A G T C C T G A G T C A T G A C C G T A C T G A A T G C T C G A G T A C

PB0121.1_Foxj3_2/Jaspar

Match Rank:2
Score:0.70
Offset:0
Orientation:forward strand
Alignment:AGTATCATAACAA----
AACACCAAAACAAAGGA
 C G T A A C T G A C G T C T G A A C G T A G T C G T C A A C G T C G T A C G T A A G T C C G T A C G T A A C G T A C G T A C G T A C G T
G T C A C G T A A G T C C T G A G A T C G A T C T G C A G C T A G T C A C G T A A G T C C G T A C G T A G C T A C A T G T A C G C G T A

PB0123.1_Foxl1_2/Jaspar

Match Rank:3
Score:0.68
Offset:1
Orientation:forward strand
Alignment:AGTATCATAACAA----
-ATATCAAAACAAAACA
 C G T A A C T G A C G T C T G A A C G T A G T C G T C A A C G T C G T A C G T A A G T C C G T A C G T A A C G T A C G T A C G T A C G T
A C G T G C T A C G A T C G T A C G A T G A T C G C T A G C T A G T C A C G T A A G T C C G T A C G T A G T C A C G T A G T A C G T C A

OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:4
Score:0.67
Offset:0
Orientation:forward strand
Alignment:AGTATCATAACAA--
ATTTGCATAACAATG
 C G T A A C T G A C G T C T G A A C G T A G T C G T C A A C G T C G T A C G T A A G T C C G T A C G T A A C G T A C G T
G C T A G C A T G A C T G C A T T C A G G T A C G C T A G C A T C T G A G C T A T A G C G C T A C T G A C G A T C T A G

Pou5f1::Sox2/MA0142.1/Jaspar

Match Rank:5
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:AGTATCATAACAA--
ATTTGCATAACAAAG
 C G T A A C T G A C G T C T G A A C G T A G T C G T C A A C G T C G T A C G T A A G T C C G T A C G T A A C G T A C G T
G T C A G A C T G A C T G C A T T C A G T G A C G C T A C G A T C T G A G C T A A T G C G T C A T C G A C G T A T C A G

PB0062.1_Sox12_1/Jaspar

Match Rank:6
Score:0.64
Offset:2
Orientation:reverse strand
Alignment:AGTATCATAACAA---
--NTTNAGAACAATTA
 C G T A A C T G A C G T C T G A A C G T A G T C G T C A A C G T C G T A C G T A A G T C C G T A C G T A A C G T A C G T A C G T
A C G T A C G T C A T G C G A T C G A T C A G T C G T A A C T G C T G A G C T A A G T C G C T A C G T A G C A T C G A T C T G A

PB0119.1_Foxa2_2/Jaspar

Match Rank:7
Score:0.63
Offset:2
Orientation:forward strand
Alignment:AGTATCATAACAA----
--AAAAATAACAAACGG
 C G T A A C T G A C G T C T G A A C G T A G T C G T C A A C G T C G T A C G T A A G T C C G T A C G T A A C G T A C G T A C G T A C G T
A C G T A C G T T C G A T C G A C G T A C G T A G T C A A C G T C T G A C G T A G A T C G T C A G C T A C T G A T A G C T A C G A T C G

PB0067.1_Sox18_1/Jaspar

Match Rank:8
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:AGTATCATAACAA-----
--NNTNANAACAATTNNA
 C G T A A C T G A C G T C T G A A C G T A G T C G T C A A C G T C G T A C G T A A G T C C G T A C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T C G A T C A G T G C A T C A G T C G T A T C A G C G T A G C T A A G T C G C T A C G T A C G A T C A G T T C A G C G T A T C G A

MF0011.1_HMG_class/Jaspar

Match Rank:9
Score:0.59
Offset:8
Orientation:reverse strand
Alignment:AGTATCATAACAA-
--------AACAAT
 C G T A A C T G A C G T C T G A A C G T A G T C G T C A A C G T C G T A C G T A A G T C C G T A C G T A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C G A C G T A G A T C C T G A T G C A C G A T

Sox5/MA0087.1/Jaspar

Match Rank:10
Score:0.59
Offset:7
Orientation:reverse strand
Alignment:AGTATCATAACAA-
-------NAACAAT
 C G T A A C T G A C G T C T G A A C G T A G T C G T C A A C G T C G T A C G T A A G T C C G T A C G T A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T G C A T C G T A C T G A A G T C C G T A G T C A A C G T