Information for 4-TGGAGAGCGC (Motif 3)

G C A T A C T G A C T G G C T A A C T G C G T A A C T G A G T C A C T G G T A C
Reverse Opposite:
A C T G T G A C C T A G A G T C C G A T T A G C C G A T A G T C A G T C C G T A
p-value:1e-180
log p-value:-4.163e+02
Information Content per bp:1.843
Number of Target Sequences with motif146.0
Percentage of Target Sequences with motif17.83%
Number of Background Sequences with motif206.1
Percentage of Background Sequences with motif0.43%
Average Position of motif in Targets47.0 +/- 18.5bp
Average Position of motif in Background49.1 +/- 31.5bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.04
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0095.1_Zfp161_1/Jaspar

Match Rank:1
Score:0.63
Offset:0
Orientation:forward strand
Alignment:TGGAGAGCGC------
TGGCGCGCGCGCCTGA
 G C A T A C T G A C T G G C T A A C T G C G T A A C T G A G T C A C T G G T A C A C G T A C G T A C G T A C G T A C G T A C G T
C A G T C T A G C T A G A T G C T C A G G A T C C T A G A G T C C T A G A G T C C T A G G A T C G A T C G A C T C T A G C G T A

Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer

Match Rank:2
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-TGGAGAGCGC
BTBRAGTGSN-
 A C G T G C A T A C T G A C T G G C T A A C T G C G T A A C T G A G T C A C T G G T A C
A T G C G A C T A G C T C T A G C G T A C T A G C G A T C T A G A T C G G A T C A C G T

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:3
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:TGGAGAGCGC
TTGAGTGSTT
 G C A T A C T G A C T G G C T A A C T G C G T A A C T G A G T C A C T G G T A C
G C A T A C G T C T A G C G T A C A T G C G A T C T A G A T C G G A C T G A C T

REST/MA0138.2/Jaspar

Match Rank:4
Score:0.59
Offset:-10
Orientation:forward strand
Alignment:----------TGGAGAGCGC-
TTCAGCACCATGGACAGCGCC
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G C A T A C T G A C T G G C T A A C T G C G T A A C T G A G T C A C T G G T A C A C G T
C A G T A G C T G A T C T C G A T A C G A T G C C G T A A T G C G A T C G C T A G A C T C T A G T C A G G T C A A T G C G C T A T C A G G T A C C A T G T A G C G A T C

ZNF354C/MA0130.1/Jaspar

Match Rank:5
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-TGGAGAGCGC
GTGGAT-----
 A C G T G C A T A C T G A C T G G C T A A C T G C G T A A C T G A G T C A C T G G T A C
A T C G A C G T A C T G A C T G C G T A A C G T A C G T A C G T A C G T A C G T A C G T

REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer

Match Rank:6
Score:0.58
Offset:-9
Orientation:reverse strand
Alignment:---------TGGAGAGCGC-
TCAGCACCATGGACAGCTCC
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G C A T A C T G A C T G G C T A A C T G C G T A A C T G A G T C A C T G G T A C A C G T
A G C T G A T C C T G A T C A G T A G C C T G A A T G C G A T C G C T A G A C T C T A G C T A G G T C A A T G C C G T A T C A G G T A C C A G T T A G C G A T C

POL010.1_DCE_S_III/Jaspar

Match Rank:7
Score:0.58
Offset:4
Orientation:forward strand
Alignment:TGGAGAGCGC
----CAGCC-
 G C A T A C T G A C T G G C T A A C T G C G T A A C T G A G T C A C T G G T A C
A C G T A C G T A C G T A C G T T A G C C G T A A C T G A G T C A T G C A C G T

Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer

Match Rank:8
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-TGGAGAGCGC
CTYRAGTGSY-
 A C G T G C A T A C T G A C T G G C T A A C T G C G T A A C T G A G T C A C T G G T A C
A T G C G C A T A G C T C T A G C G T A A C T G C G A T C T A G A T G C G A T C A C G T

Nkx2-5(var.2)/MA0503.1/Jaspar

Match Rank:9
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-TGGAGAGCGC
CTTGAGTGGCT
 A C G T G C A T A C T G A C T G G C T A A C T G C G T A A C T G A G T C A C T G G T A C
A T G C G A C T C A G T C T A G C G T A A C T G C G A T A C T G A T C G G A T C G A C T

REL/MA0101.1/Jaspar

Match Rank:10
Score:0.53
Offset:1
Orientation:reverse strand
Alignment:TGGAGAGCGC-
-GGAAANCCCC
 G C A T A C T G A C T G G C T A A C T G C G T A A C T G A G T C A C T G G T A C A C G T
A C G T A C T G C T A G C G T A C G T A C G T A A C G T G A T C G A T C T A G C T A G C