Information for 1-TCAGBACCATGGACAG (Motif 1)

G A C T A G T C C T G A T A C G A T G C C T G A A G T C G A T C C G T A G C A T C T A G C T A G G T C A A T G C C G T A T C A G
Reverse Opposite:
A G T C C G A T T A C G A C G T A G T C A G T C C G T A C G A T C T A G A C T G A G C T T A C G A T G C G A C T T C A G C T G A
p-value:1e-954
log p-value:-2.198e+03
Information Content per bp:1.700
Number of Target Sequences with motif404.0
Percentage of Target Sequences with motif49.33%
Number of Background Sequences with motif51.8
Percentage of Background Sequences with motif0.11%
Average Position of motif in Targets51.3 +/- 10.9bp
Average Position of motif in Background49.3 +/- 29.5bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.02
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

REST/MA0138.2/Jaspar

Match Rank:1
Score:0.92
Offset:-1
Orientation:forward strand
Alignment:-TCAGBACCATGGACAG----
TTCAGCACCATGGACAGCGCC
 A C G T G A C T A G T C C T G A T A C G A T G C C T G A A G T C G A T C C G T A G C A T C T A G C T A G G T C A A T G C C G T A T C A G A C G T A C G T A C G T A C G T
C A G T A G C T G A T C T C G A T A C G A T G C C G T A A T G C G A T C G C T A G A C T C T A G T C A G G T C A A T G C G C T A T C A G G T A C C A T G T A G C G A T C

REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer

Match Rank:2
Score:0.91
Offset:0
Orientation:reverse strand
Alignment:TCAGBACCATGGACAG----
TCAGCACCATGGACAGCTCC
 G A C T A G T C C T G A T A C G A T G C C T G A A G T C G A T C C G T A G C A T C T A G C T A G G T C A A T G C C G T A T C A G A C G T A C G T A C G T A C G T
A G C T G A T C C T G A T C A G T A G C C T G A A T G C G A T C G C T A G A C T C T A G C T A G G T C A A T G C C G T A T C A G G T A C C A G T T A G C G A T C

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:3
Score:0.64
Offset:6
Orientation:forward strand
Alignment:TCAGBACCATGGACAG
------CCAGGAACAG
 G A C T A G T C C T G A T A C G A T G C C T G A A G T C G A T C C G T A G C A T C T A G C T A G G T C A A T G C C G T A T C A G
A C G T A C G T A C G T A C G T A C G T A C G T T A G C G T A C C G T A C T A G A C T G T G C A C G T A A T G C C G T A A T C G

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:4
Score:0.57
Offset:6
Orientation:forward strand
Alignment:TCAGBACCATGGACAG
------CAAAGGTCAG
 G A C T A G T C C T G A T A C G A T G C C T G A A G T C G A T C C G T A G C A T C T A G C T A G G T C A A T G C C G T A T C A G
A C G T A C G T A C G T A C G T A C G T A C G T A G T C T G C A T C G A C T G A A C T G C A T G A C G T A T G C G T C A T A C G

MEIS2/MA0774.1/Jaspar

Match Rank:5
Score:0.56
Offset:9
Orientation:forward strand
Alignment:TCAGBACCATGGACAG-
---------TTGACAGC
 G A C T A G T C C T G A T A C G A T G C C T G A A G T C G A T C C G T A G C A T C T A G C T A G G T C A A T G C C G T A T C A G A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G A T C A G T A C T G C G T A G T A C T G C A T A C G T A G C

MEIS3/MA0775.1/Jaspar

Match Rank:6
Score:0.54
Offset:9
Orientation:forward strand
Alignment:TCAGBACCATGGACAG-
---------TTGACAGG
 G A C T A G T C C T G A T A C G A T G C C T G A A G T C G A T C C G T A G C A T C T A G C T A G G T C A A T G C C G T A T C A G A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G A T G C A T A T C G C T G A G A T C C T G A A C T G A T C G

SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer

Match Rank:7
Score:0.54
Offset:7
Orientation:forward strand
Alignment:TCAGBACCATGGACAG-
-------CAAGGHCANV
 G A C T A G T C C T G A T A C G A T G C C T G A A G T C G A T C C G T A G C A T C T A G C T A G G T C A A T G C C G T A T C A G A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T G A C C G T A C T G A A C T G A C T G G A C T G A T C T G C A G T A C T A C G

POL009.1_DCE_S_II/Jaspar

Match Rank:8
Score:0.53
Offset:11
Orientation:reverse strand
Alignment:TCAGBACCATGGACAG-
-----------CACAGN
 G A C T A G T C C T G A T A C G A T G C C T G A A G T C G A T C C G T A G C A T C T A G C T A G G T C A A T G C C G T A T C A G A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A G C C T G A T A G C G T C A A C T G A T G C

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:9
Score:0.53
Offset:3
Orientation:reverse strand
Alignment:TCAGBACCATGGACAG
---GAACAATGGN---
 G A C T A G T C C T G A T A C G A T G C C T G A A G T C G A T C C G T A G C A T C T A G C T A G G T C A A T G C C G T A T C A G
A C G T A C G T A C G T C T A G T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G T A C G A C G T A C G T A C G T

Esrra/MA0592.2/Jaspar

Match Rank:10
Score:0.53
Offset:2
Orientation:reverse strand
Alignment:TCAGBACCATGGACAG
--ATGACCTTGAA---
 G A C T A G T C C T G A T A C G A T G C C T G A A G T C G A T C C G T A G C A T C T A G C T A G G T C A A T G C C G T A T C A G
A C G T A C G T C G T A A G C T T A C G T G C A T G A C T G A C A G C T A G C T A T C G C T G A T G C A A C G T A C G T A C G T