Information for 11-GTKGGGCSACTKGGKT (Motif 6)

A C T G A C G T C A G T C T A G A C T G A C T G A G T C A T G C C G T A A G T C A C G T A C G T A T C G A C T G A C T G A C G T
Reverse Opposite:
C G T A G T A C A G T C A T G C G T C A C G T A A C T G A C G T A T C G A C T G A G T C A G T C A G T C G T C A G T C A A G T C
p-value:1e-16
log p-value:-3.699e+01
Information Content per bp:1.875
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.85%
Number of Background Sequences with motif0.4
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets43.9 +/- 15.6bp
Average Position of motif in Background52.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0131.1_Gmeb1_2/Jaspar

Match Rank:1
Score:0.54
Offset:2
Orientation:forward strand
Alignment:GTKGGGCSACTKGGKT--
--TGGGCGACGTCGTTAA
 A C T G A C G T C A G T C T A G A C T G A C T G A G T C A T G C C G T A A G T C A C G T A C G T A T C G A C T G A C T G A C G T A C G T A C G T
A C G T A C G T C A G T C A T G T C A G A C T G G T A C T C A G G C T A T A G C A C T G C A G T A G T C C A T G G A C T A G C T G T C A G C T A

Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer

Match Rank:2
Score:0.53
Offset:1
Orientation:forward strand
Alignment:GTKGGGCSACTKGGKT-
-GTAGGTCACTGGGTCA
 A C T G A C G T C A G T C T A G A C T G A C T G A G T C A T G C C G T A A G T C A C G T A C G T A T C G A C T G A C T G A C G T A C G T
A C G T A T C G A G C T C T G A C T A G A C T G A C G T G T A C G C T A A T G C A C G T C T A G C A T G T A C G C G A T A T G C C G T A

Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer

Match Rank:3
Score:0.53
Offset:0
Orientation:reverse strand
Alignment:GTKGGGCSACTKGGKT
GTGGCGTGACNG----
 A C T G A C G T C A G T C T A G A C T G A C T G A G T C A T G C C G T A A G T C A C G T A C G T A T C G A C T G A C T G A C G T
T C A G A C G T C A T G A C T G A T G C A T C G A C G T A T C G C T G A A G T C G A T C C A T G A C G T A C G T A C G T A C G T

VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer

Match Rank:4
Score:0.52
Offset:1
Orientation:forward strand
Alignment:GTKGGGCSACTKGGKT-----
-NGAGGTCANNGAGTTCANNN
 A C T G A C G T C A G T C T A G A C T G A C T G A G T C A T G C C G T A A G T C A C G T A C G T A T C G A C T G A C T G A C G T A C G T A C G T A C G T A C G T A C G T
A C G T C T G A T C A G C T G A C T A G C A T G A C G T A T G C C G T A A T G C G C A T T C A G C T G A A C T G A C G T C A G T A G T C C G T A C A G T C T A G C A T G

NFY(CCAAT)/Promoter/Homer

Match Rank:5
Score:0.52
Offset:4
Orientation:forward strand
Alignment:GTKGGGCSACTKGGKT
----AGCCAATCGG--
 A C T G A C G T C A G T C T A G A C T G A C T G A G T C A T G C C G T A A G T C A C G T A C G T A T C G A C T G A C T G A C G T
A C G T A C G T A C G T A C G T T C G A C T A G A G T C A G T C C G T A C G T A A C G T T A G C T C A G T A C G A C G T A C G T

RXRA::VDR/MA0074.1/Jaspar

Match Rank:6
Score:0.51
Offset:3
Orientation:forward strand
Alignment:GTKGGGCSACTKGGKT--
---GGGTCAACGAGTTCA
 A C T G A C G T C A G T C T A G A C T G A C T G A G T C A T G C C G T A A G T C A C G T A C G T A T C G A C T G A C T G A C G T A C G T A C G T
A C G T A C G T A C G T C T A G A C T G A C T G A C G T A G T C C T G A G C A T A G T C C T A G C T A G A C T G A C G T C G A T A G T C T C G A

n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer

Match Rank:7
Score:0.50
Offset:4
Orientation:forward strand
Alignment:GTKGGGCSACTKGGKT
----NNCCACGTGG--
 A C T G A C G T C A G T C T A G A C T G A C T G A G T C A T G C C G T A A G T C A C G T A C G T A T C G A C T G A C T G A C G T
A C G T A C G T A C G T A C G T T A C G T C G A T A G C A G T C C G T A A G T C C T A G G C A T A C T G A T C G A C G T A C G T

PLAG1/MA0163.1/Jaspar

Match Rank:8
Score:0.50
Offset:1
Orientation:forward strand
Alignment:GTKGGGCSACTKGGKT
-GGGGCCCAAGGGGG-
 A C T G A C G T C A G T C T A G A C T G A C T G A G T C A T G C C G T A A G T C A C G T A C G T A T C G A C T G A C T G A C G T
A C G T A C T G C T A G A C T G A C T G A T G C A G T C G T A C C G T A T G C A C A T G A C T G A C T G A C T G C T A G A C G T

PB0157.1_Rara_2/Jaspar

Match Rank:9
Score:0.49
Offset:-3
Orientation:forward strand
Alignment:---GTKGGGCSACTKGGKT
AGAGCGGGGTCAAGTA---
 A C G T A C G T A C G T A C T G A C G T C A G T C T A G A C T G A C T G A G T C A T G C C G T A A G T C A C G T A C G T A T C G A C T G A C T G A C G T
G T C A C A T G G T C A C A T G A G T C A T C G T A C G A C T G C A T G C G A T A G T C C T G A G T C A A C T G A C G T G T C A A C G T A C G T A C G T

NKX2-3/MA0672.1/Jaspar

Match Rank:10
Score:0.49
Offset:5
Orientation:forward strand
Alignment:GTKGGGCSACTKGGKT
-----ACCACTTGAA-
 A C T G A C G T C A G T C T A G A C T G A C T G A G T C A T G C C G T A A G T C A C G T A C G T A T C G A C T G A C T G A C G T
A C G T A C G T A C G T A C G T A C G T T G C A T A G C G A T C G C T A G T A C A C G T A G C T T C A G C G T A T C G A A C G T