Information for 12-TCGGGTTTHT (Motif 21)

A G C T G T A C A T C G A C T G A C T G A C G T G C A T G C A T G T A C A C G T
Reverse Opposite:
C G T A C A T G C G T A C G T A C G T A T G A C G T A C A T G C C A T G C T G A
p-value:1e-7
log p-value:-1.797e+01
Information Content per bp:1.740
Number of Target Sequences with motif13.0
Percentage of Target Sequences with motif1.59%
Number of Background Sequences with motif93.7
Percentage of Background Sequences with motif0.20%
Average Position of motif in Targets48.4 +/- 30.3bp
Average Position of motif in Background51.8 +/- 24.4bp
Strand Bias (log2 ratio + to - strand density)-2.5
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Six2(Homeobox)/NephronProgenitor-Six2-ChIP-Seq(GSE39837)/Homer

Match Rank:1
Score:0.61
Offset:-3
Orientation:reverse strand
Alignment:---TCGGGTTTHT
GKMTCADRTTWC-
 A C G T A C G T A C G T A G C T G T A C A T C G A C T G A C T G A C G T G C A T G C A T G T A C A C G T
C T A G C A G T T G C A A C G T G A T C T C G A C T A G T C A G A C G T C A G T G C A T G A T C A C G T

PB0141.1_Isgf3g_2/Jaspar

Match Rank:2
Score:0.55
Offset:-3
Orientation:reverse strand
Alignment:---TCGGGTTTHT-
NNGTANTGTTTTNC
 A C G T A C G T A C G T A G C T G T A C A T C G A C T G A C T G A C G T G C A T G C A T G T A C A C G T A C G T
G A C T C T G A C A T G C G A T G T C A T G C A G C A T A T C G G A C T G C A T G C A T G C A T A T C G T G A C

PB0157.1_Rara_2/Jaspar

Match Rank:3
Score:0.55
Offset:-4
Orientation:forward strand
Alignment:----TCGGGTTTHT--
AGAGCGGGGTCAAGTA
 A C G T A C G T A C G T A C G T A G C T G T A C A T C G A C T G A C T G A C G T G C A T G C A T G T A C A C G T A C G T A C G T
G T C A C A T G G T C A C A T G A G T C A T C G T A C G A C T G C A T G C G A T A G T C C T G A G T C A A C T G A C G T G T C A

Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer

Match Rank:4
Score:0.54
Offset:1
Orientation:reverse strand
Alignment:TCGGGTTTHT
-NGGGATTA-
 A G C T G T A C A T C G A C T G A C T G A C G T G C A T G C A T G T A C A C G T
A C G T T G A C C T A G C T A G T C A G G T C A G C A T G A C T G C T A A C G T

RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer

Match Rank:5
Score:0.54
Offset:-2
Orientation:reverse strand
Alignment:--TCGGGTTTHT
NNTGTGGTTT--
 A C G T A C G T A G C T G T A C A T C G A C T G A C T G A C G T G C A T G C A T G T A C A C G T
A C G T G A C T C A G T A C T G G A C T A C T G A C T G A G C T A G C T C G A T A C G T A C G T

ETV2/MA0762.1/Jaspar

Match Rank:6
Score:0.54
Offset:-4
Orientation:reverse strand
Alignment:----TCGGGTTTHT
TATTTCCGGTT---
 A C G T A C G T A C G T A C G T A G C T G T A C A T C G A C T G A C T G A C G T G C A T G C A T G T A C A C G T
G A C T T C G A A G C T C G A T A C G T A G T C A G T C A C T G A T C G A G C T G A C T A C G T A C G T A C G T

RUNX2/MA0511.2/Jaspar

Match Rank:7
Score:0.54
Offset:-1
Orientation:reverse strand
Alignment:-TCGGGTTTHT
TTGCGGTTT--
 A C G T A G C T G T A C A T C G A C T G A C T G A C G T G C A T G C A T G T A C A C G T
A G C T A C G T A C T G G A T C A C T G A C T G A C G T G A C T C G A T A C G T A C G T

Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer

Match Rank:8
Score:0.54
Offset:-3
Orientation:forward strand
Alignment:---TCGGGTTTHT
GKVTCADRTTWC-
 A C G T A C G T A C G T A G C T G T A C A T C G A C T G A C T G A C G T G C A T G C A T G T A C A C G T
C T A G C A T G T G C A A C G T A G T C C G T A C A T G T C A G A C G T A C G T G C T A A G T C A C G T

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:9
Score:0.54
Offset:2
Orientation:reverse strand
Alignment:TCGGGTTTHT----
--DGWTTTATGRCN
 A G C T G T A C A T C G A C T G A C T G A C G T G C A T G C A T G T A C A C G T A C G T A C G T A C G T A C G T
A C G T A C G T C A G T C A T G G C A T C G A T C G A T C G A T C T G A A G C T C A T G C T A G A G T C A T G C

RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer

Match Rank:10
Score:0.54
Offset:-1
Orientation:reverse strand
Alignment:-TCGGGTTTHT
CTGTGGTTTN-
 A C G T A G C T G T A C A T C G A C T G A C T G A C G T G C A T G C A T G T A C A C G T
G A T C A C G T A C T G A G C T A C T G A C T G A G C T A G C T C G A T A T C G A C G T