Information for 9-GCTACCTTGGAGA (Motif 5)

C A T G A G T C A G C T C G T A A G T C A G T C C G A T A C G T A C T G A C T G C G T A A C T G C G T A
Reverse Opposite:
A C G T G T A C A C G T A G T C A G T C C G T A C G T A A C T G A C T G A C G T C T G A A C T G G A T C
p-value:1e-13
log p-value:-3.090e+01
Information Content per bp:1.905
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.72%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets66.7 +/- 15.9bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)2.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0014.1_Esrra_1/Jaspar

Match Rank:1
Score:0.60
Offset:-4
Orientation:reverse strand
Alignment:----GCTACCTTGGAGA
NNNNATGACCTTGANTN
 A C G T A C G T A C G T A C G T C A T G A G T C A G C T C G T A A G T C A G T C C G A T A C G T A C T G A C T G C G T A A C T G C G T A
C A G T G T A C T C A G A G T C C G T A A G C T T C A G G C T A G A T C G T A C A G C T G A C T A T C G T C G A G T C A C A G T G T C A

Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:2
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-GCTACCTTGGAGA
NGTTGCCATGGCAA
 A C G T C A T G A G T C A G C T C G T A A G T C A G T C C G A T A C G T A C T G A C T G C G T A A C T G C G T A
A C T G T C A G A G C T G A C T C A T G A G T C A G T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A

PB0160.1_Rfxdc2_2/Jaspar

Match Rank:3
Score:0.57
Offset:2
Orientation:forward strand
Alignment:GCTACCTTGGAGA------
--CTACTTGGATACGGAAT
 C A T G A G T C A G C T C G T A A G T C A G T C C G A T A C G T A C T G A C T G C G T A A C T G C G T A A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A T G C A C G T T C G A A T G C C A G T G A C T T C A G A C T G C G T A A C G T C G T A G A T C T A C G T A C G C G T A C G T A G C A T

X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:4
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-GCTACCTTGGAGA
GGTTGCCATGGCAA
 A C G T C A T G A G T C A G C T C G T A A G T C A G T C C G A T A C G T A C T G A C T G C G T A A C T G C G T A
C A T G C T A G A G C T G A C T C A T G A G T C G A T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A

PB0158.1_Rfx3_2/Jaspar

Match Rank:5
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--GCTACCTTGGAGA--------
ACTGACCCTTGGTTACCACAAAG
 A C G T A C G T C A T G A G T C A G C T C G T A A G T C A G T C C G A T A C G T A C T G A C T G C G T A A C T G C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
T G C A A G T C A C G T A T C G G C T A A T G C T A C G A T G C G C A T C G A T T C A G A C T G C G A T C A G T C G T A G A T C T G A C T C G A T G A C T C G A T C G A C G T A A T C G

Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer

Match Rank:6
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:GCTACCTTGGAGA
-TGACCTTGAN--
 C A T G A G T C A G C T C G T A A G T C A G T C C G A T A C G T A C T G A C T G C G T A A C T G C G T A
A C G T G C A T C T A G C T G A T G A C G A T C A G C T C A G T A T C G C T G A T G C A A C G T A C G T

Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer

Match Rank:7
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:GCTACCTTGGAGA
-TGACCTTGAV--
 C A T G A G T C A G C T C G T A A G T C A G T C C G A T A C G T A C T G A C T G C G T A A C T G C G T A
A C G T G C A T C T A G C T G A G A T C G T A C G A C T G A C T A T C G C T G A T G C A A C G T A C G T

REST/MA0138.2/Jaspar

Match Rank:8
Score:0.55
Offset:-3
Orientation:forward strand
Alignment:---GCTACCTTGGAGA-----
TTCAGCACCATGGACAGCGCC
 A C G T A C G T A C G T C A T G A G T C A G C T C G T A A G T C A G T C C G A T A C G T A C T G A C T G C G T A A C T G C G T A A C G T A C G T A C G T A C G T A C G T
C A G T A G C T G A T C T C G A T A C G A T G C C G T A A T G C G A T C G C T A G A C T C T A G T C A G G T C A A T G C G C T A T C A G G T A C C A T G T A G C G A T C

PB0051.1_Osr2_1/Jaspar

Match Rank:9
Score:0.54
Offset:-4
Orientation:reverse strand
Alignment:----GCTACCTTGGAGA
CNNNGCTACTGTANNN-
 A C G T A C G T A C G T A C G T C A T G A G T C A G C T C G T A A G T C A G T C C G A T A C G T A C T G A C T G C G T A A C T G C G T A
G A T C C G A T A C G T C G A T T C A G A G T C A G C T G C T A A G T C A G C T C A T G A C G T C G T A A G T C C G T A C G A T A C G T

Rfx1/MA0509.1/Jaspar

Match Rank:10
Score:0.54
Offset:0
Orientation:forward strand
Alignment:GCTACCTTGGAGA-
GTTGCCATGGCAAC
 C A T G A G T C A G C T C G T A A G T C A G T C C G A T A C G T A C T G A C T G C G T A A C T G C G T A A C G T
C T A G A C G T G A C T A C T G A G T C A G T C G C T A G C A T C T A G C T A G G T A C C T G A C T G A A G T C