Information for 17-GCATGGATCA (Motif 19)

A C T G A G T C C G T A A C G T A C T G A C T G C G T A A C G T A G T C C G T A
Reverse Opposite:
C G A T A C T G C G T A C G A T A G T C A G T C C G T A A C G T A C T G A G T C
p-value:1e-3
log p-value:-7.155e+00
Information Content per bp:1.943
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.48%
Number of Background Sequences with motif23.6
Percentage of Background Sequences with motif0.05%
Average Position of motif in Targets59.3 +/- 32.0bp
Average Position of motif in Background56.0 +/- 32.1bp
Strand Bias (log2 ratio + to - strand density)2.3
Multiplicity (# of sites on avg that occur together)1.50
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RHOXF1/MA0719.1/Jaspar

Match Rank:1
Score:0.69
Offset:3
Orientation:reverse strand
Alignment:GCATGGATCA-
---NGGATTAN
 A C T G A G T C C G T A A C G T A C T G A C T G C G T A A C G T A G T C C G T A A C G T
A C G T A C G T A C G T C A T G C T A G A C T G G T C A A C G T G A C T G C T A C G A T

CUX1/MA0754.1/Jaspar

Match Rank:2
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:GCATGGATCA
NTATCGATTA
 A C T G A G T C C G T A A C G T A C T G A C T G C G T A A C G T A G T C C G T A
C A G T A C G T C G T A G C A T A G T C T C A G T C G A G A C T G A C T C T G A

HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer

Match Rank:3
Score:0.65
Offset:0
Orientation:forward strand
Alignment:GCATGGATCA
NTATYGATCH
 A C T G A G T C C G T A A C G T A C T G A C T G C G T A A C G T A G T C C G T A
C T A G C A G T C G T A A C G T A G T C A C T G C G T A A G C T A G T C G A T C

DMRT3/MA0610.1/Jaspar

Match Rank:4
Score:0.63
Offset:1
Orientation:forward strand
Alignment:GCATGGATCA--
-AATGTATCAAT
 A C T G A G T C C G T A A C G T A C T G A C T G C G T A A C G T A G T C C G T A A C G T A C G T
A C G T G T C A C G T A C G A T A C T G A C G T C G T A C G A T A G T C G T C A C G T A A C G T

Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer

Match Rank:5
Score:0.63
Offset:0
Orientation:forward strand
Alignment:GCATGGATCA
TCATCAATCA
 A C T G A G T C C G T A A C G T A C T G A C T G C G T A A C G T A G T C C G T A
G A C T G T A C T G C A A C G T G A T C G C T A T C G A A C G T A G T C C G T A

CUX2/MA0755.1/Jaspar

Match Rank:6
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:GCATGGATCA
TTATCGATTA
 A C T G A G T C C G T A A C G T A C T G A C T G C G T A A C G T A G T C C G T A
C G A T C G A T C G T A G C A T G A T C T C A G T C G A G A C T G A C T C G T A

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer

Match Rank:7
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-GCATGGATCA-
GYCATCMATCAT
 A C G T A C T G A G T C C G T A A C G T A C T G A C T G C G T A A C G T A G T C C G T A A C G T
T A C G G A C T T G A C C G T A A C G T G A T C G T C A C G T A A C G T A T G C C G T A G A C T

FOS/MA0476.1/Jaspar

Match Rank:8
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:GCATGGATCA--
-NATGAGTCANN
 A C T G A G T C C G T A A C G T A C T G A C T G C G T A A C G T A G T C C G T A A C G T A C G T
A C G T T C G A T C G A A C G T A C T G C G T A T A C G A C G T G T A C C G T A A T G C G T C A

JUND/MA0491.1/Jaspar

Match Rank:9
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:GCATGGATCA--
-NATGAGTCACN
 A C T G A G T C C G T A A C G T A C T G A C T G C G T A A C G T A G T C C G T A A C G T A C G T
A C G T A T C G T C G A A C G T A C T G C G T A T A C G A C G T A G T C C G T A A G T C G A T C

Cux2(Homeobox)/Liver-Cux2-ChIP-Seq(GSE35985)/Homer

Match Rank:10
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:GCATGGATCA--
--ATTGATTYND
 A C T G A G T C C G T A A C G T A C T G A C T G C G T A A C G T A G T C C G T A A C G T A C G T
A C G T A C G T C G T A A C G T A G C T A T C G G T C A A G C T G A C T A G C T T G A C C G A T