Information for 10-CCGTCGCAGCGACGGC (Motif 13)

A G T C A G T C A C T G A C G T A G T C A C T G A G T C C G T A A C T G A G T C A C T G C G T A A G T C A C T G A C T G A G T C
Reverse Opposite:
A C T G A G T C A G T C A C T G A C G T A G T C A C T G A G T C A C G T A C T G A G T C A C T G C G T A A G T C A C T G A C T G
p-value:1e-3
log p-value:-8.785e+00
Information Content per bp:1.530
Number of Target Sequences with motif2.0
Percentage of Target Sequences with motif0.24%
Number of Background Sequences with motif1.7
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets50.5 +/- 6.6bp
Average Position of motif in Background42.0 +/- 20.1bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0055.1_Rfx4_1/Jaspar

Match Rank:1
Score:0.51
Offset:-2
Orientation:forward strand
Alignment:--CCGTCGCAGCGACGGC
TACCATAGCAACGGT---
 A C G T A C G T A G T C A G T C A C T G A C G T A G T C A C T G A G T C C G T A A C T G A G T C A C T G C G T A A G T C A C T G A C T G A G T C
A G C T G T C A T A G C A T G C G T C A A G C T T C G A C T A G G A T C C T G A C T G A A G T C T A C G T C A G C G A T A C G T A C G T A C G T

NHLH1/MA0048.2/Jaspar

Match Rank:2
Score:0.50
Offset:4
Orientation:forward strand
Alignment:CCGTCGCAGCGACGGC
----CGCAGCTGCG--
 A G T C A G T C A C T G A C G T A G T C A C T G A G T C C G T A A C T G A G T C A C T G C G T A A G T C A C T G A C T G A G T C
A C G T A C G T A C G T A C G T T G A C T C A G G T A C T G C A A T C G T A G C A C G T T A C G G A T C A C T G A C G T A C G T

PB0179.1_Sp100_2/Jaspar

Match Rank:3
Score:0.49
Offset:1
Orientation:reverse strand
Alignment:CCGTCGCAGCGACGGC
-NNTTTANNCGACGNA
 A G T C A G T C A C T G A C G T A G T C A C T G A G T C C G T A A C T G A G T C A C T G C G T A A G T C A C T G A C T G A G T C
A C G T T A G C G C A T C G A T C G A T C G A T G T C A T G C A C A T G A G T C A C T G C G T A A G T C C T A G T A C G T C G A

PB0056.1_Rfxdc2_1/Jaspar

Match Rank:4
Score:0.49
Offset:1
Orientation:forward strand
Alignment:CCGTCGCAGCGACGGC
-CCGCATAGCAACGGA
 A G T C A G T C A C T G A C G T A G T C A C T G A G T C C G T A A C T G A G T C A C T G C G T A A G T C A C T G A C T G A G T C
A C G T A G T C A G T C T A C G A T G C G C T A G A C T T C G A C T A G G A T C C T G A T C G A A G T C T A C G T C A G C T G A

ZIC3/MA0697.1/Jaspar

Match Rank:5
Score:0.46
Offset:3
Orientation:reverse strand
Alignment:CCGTCGCAGCGACGGC--
---NCGCAGCGGGGGGTC
 A G T C A G T C A C T G A C G T A G T C A C T G A G T C C G T A A C T G A G T C A C T G C G T A A G T C A C T G A C T G A G T C A C G T A C G T
A C G T A C G T A C G T C A T G G T A C C T A G G A T C T G C A T C A G A G T C C T A G A C T G A C T G C A T G C A T G C A T G A G C T T G A C

POL010.1_DCE_S_III/Jaspar

Match Rank:6
Score:0.46
Offset:6
Orientation:forward strand
Alignment:CCGTCGCAGCGACGGC
------CAGCC-----
 A G T C A G T C A C T G A C G T A G T C A C T G A G T C C G T A A C T G A G T C A C T G C G T A A G T C A C T G A C T G A G T C
A C G T A C G T A C G T A C G T A C G T A C G T T A G C C G T A A C T G A G T C A T G C A C G T A C G T A C G T A C G T A C G T

POL009.1_DCE_S_II/Jaspar

Match Rank:7
Score:0.46
Offset:4
Orientation:reverse strand
Alignment:CCGTCGCAGCGACGGC
----CACAGN------
 A G T C A G T C A C T G A C G T A G T C A C T G A G T C C G T A A C T G A G T C A C T G C G T A A G T C A C T G A C T G A G T C
A C G T A C G T A C G T A C G T T A G C C T G A T A G C G T C A A C T G A T G C A C G T A C G T A C G T A C G T A C G T A C G T

HINFP/MA0131.2/Jaspar

Match Rank:8
Score:0.46
Offset:6
Orientation:forward strand
Alignment:CCGTCGCAGCGACGGC--
------CAACGTCCGCGG
 A G T C A G T C A C T G A C G T A G T C A C T G A G T C C G T A A C T G A G T C A C T G C G T A A G T C A C T G A C T G A G T C A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A T G C T G C A T C G A A T G C A T C G A C G T A T G C A G T C A T C G A T G C C A T G A C T G

POL013.1_MED-1/Jaspar

Match Rank:9
Score:0.45
Offset:4
Orientation:reverse strand
Alignment:CCGTCGCAGCGACGGC
----CGGAGC------
 A G T C A G T C A C T G A C G T A G T C A C T G A G T C C G T A A C T G A G T C A C T G C G T A A G T C A C T G A C T G A G T C
A C G T A C G T A C G T A C G T A T G C A C T G A C T G C G T A A C T G A G T C A C G T A C G T A C G T A C G T A C G T A C G T

Rfx1/MA0509.1/Jaspar

Match Rank:10
Score:0.45
Offset:-4
Orientation:forward strand
Alignment:----CCGTCGCAGCGACGGC
GTTGCCATGGCAAC------
 A C G T A C G T A C G T A C G T A G T C A G T C A C T G A C G T A G T C A C T G A G T C C G T A A C T G A G T C A C T G C G T A A G T C A C T G A C T G A G T C
C T A G A C G T G A C T A C T G A G T C A G T C G C T A G C A T C T A G C T A G G T A C C T G A C T G A A G T C A C G T A C G T A C G T A C G T A C G T A C G T