Information for 2-YTGGGGAGCTGCCAGC (Motif 4)

A G C T A G C T A T C G A T C G A C T G A C T G G T C A A T C G A T G C G C A T A C T G A G T C A T G C C T G A C T A G G T A C
Reverse Opposite:
A C T G A G T C A G C T A T C G A C T G A G T C C G T A A T C G A T G C A C G T T A G C G T A C T A G C A T G C C T G A C T A G
p-value:1e-12
log p-value:-2.984e+01
Information Content per bp:1.765
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif0.99%
Number of Background Sequences with motif8.8
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets51.2 +/- 27.2bp
Average Position of motif in Background50.6 +/- 23.4bp
Strand Bias (log2 ratio + to - strand density)-1.8
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFIC::TLX1/MA0119.1/Jaspar

Match Rank:1
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:YTGGGGAGCTGCCAGC
TTGGCATGGTGCCA--
 A G C T A G C T A T C G A T C G A C T G A C T G G T C A A T C G A T G C G C A T A C T G A G T C A T G C C T G A C T A G G T A C
G A C T A C G T A C T G A C T G A G T C C G T A G A C T A T C G A T C G C A G T A C T G A G T C A G T C C G T A A C G T A C G T

Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:2
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:YTGGGGAGCTGCCAGC
-TGGCAGNCTGCCAG-
 A G C T A G C T A T C G A T C G A C T G A C T G G T C A A T C G A T G C G C A T A C T G A G T C A T G C C T G A C T A G G T A C
A C G T C A G T A C T G A T C G T G A C G C T A A C T G T A G C G T A C C G A T A C T G T A G C G T A C G C T A T C A G A C G T

NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:3
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-YTGGGGAGCTGCCAGC
CTTGGCANNNTGCCAA-
 A C G T A G C T A G C T A T C G A T C G A C T G A C T G G T C A A T C G A T G C G C A T A C T G A G T C A T G C C T G A C T A G G T A C
A G T C G A C T C A G T A C T G C T A G T G A C G C T A A T G C G C A T A T C G C G A T A C T G G A T C G T A C G T C A C T G A A C G T

NFIX/MA0671.1/Jaspar

Match Rank:4
Score:0.58
Offset:7
Orientation:forward strand
Alignment:YTGGGGAGCTGCCAGC
-------CGTGCCAAG
 A G C T A G C T A T C G A T C G A C T G A C T G G T C A A T C G A T G C G C A T A C T G A G T C A T G C C T G A C T A G G T A C
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G

NFIC/MA0161.1/Jaspar

Match Rank:5
Score:0.58
Offset:9
Orientation:reverse strand
Alignment:YTGGGGAGCTGCCAGC
---------TGCCAA-
 A G C T A G C T A T C G A T C G A C T G A C T G G T C A A T C G A T G C G C A T A C T G A G T C A T G C C T G A C T A G G T A C
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G C A T C A T G G A T C A G T C G T C A C T G A A C G T

MZF1/MA0056.1/Jaspar

Match Rank:6
Score:0.56
Offset:1
Orientation:forward strand
Alignment:YTGGGGAGCTGCCAGC
-TGGGGA---------
 A G C T A G C T A T C G A T C G A C T G A C T G G T C A A T C G A T G C G C A T A C T G A G T C A T G C C T G A C T A G G T A C
A C G T A G C T A C T G C T A G A C T G A C T G C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:7
Score:0.56
Offset:8
Orientation:forward strand
Alignment:YTGGGGAGCTGCCAGC
--------TTGCCAAG
 A G C T A G C T A T C G A T C G A C T G A C T G G T C A A T C G A T G C G C A T A C T G A G T C A T G C C T G A C T A G G T A C
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G

Hic1/MA0739.1/Jaspar

Match Rank:8
Score:0.56
Offset:8
Orientation:forward strand
Alignment:YTGGGGAGCTGCCAGC-
--------ATGCCAACC
 A G C T A G C T A T C G A T C G A C T G A C T G G T C A A T C G A T G C G C A T A C T G A G T C A T G C C T G A C T A G G T A C A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C G A A G C T T C A G T A G C G T A C G T C A T C G A A T G C A G T C

POL013.1_MED-1/Jaspar

Match Rank:9
Score:0.55
Offset:3
Orientation:reverse strand
Alignment:YTGGGGAGCTGCCAGC
---CGGAGC-------
 A G C T A G C T A T C G A T C G A C T G A C T G G T C A A T C G A T G C G C A T A C T G A G T C A T G C C T G A C T A G G T A C
A C G T A C G T A C G T A T G C A C T G A C T G C G T A A C T G A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T

NHLH1/MA0048.2/Jaspar

Match Rank:10
Score:0.54
Offset:3
Orientation:reverse strand
Alignment:YTGGGGAGCTGCCAGC
---CGCAGCTGCG---
 A G C T A G C T A T C G A T C G A C T G A C T G G T C A A T C G A T G C G C A T A C T G A G T C A T G C C T G A C T A G G T A C
A C G T A C G T A C G T T G A C C T A G A T G C T C G A A T C G T A G C A C G T A C T G A G T C A C T G A C G T A C G T A C G T