Information for 20-RGTAGATTGN (Motif 15)

C T A G A C T G G A C T C G T A A C T G C G T A A C G T A C G T C A T G A T C G
Reverse Opposite:
T A G C G T A C G T C A C G T A A C G T A G T C A C G T C T G A A G T C G A T C
p-value:1e-5
log p-value:-1.285e+01
Information Content per bp:1.759
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif1.32%
Number of Background Sequences with motif86.6
Percentage of Background Sequences with motif0.19%
Average Position of motif in Targets43.6 +/- 26.2bp
Average Position of motif in Background48.2 +/- 34.2bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer

Match Rank:1
Score:0.70
Offset:-2
Orientation:forward strand
Alignment:--RGTAGATTGN
NNTGTGGATTSS
 A C G T A C G T C T A G A C T G G A C T C G T A A C T G C G T A A C G T A C G T C A T G A T C G
C A T G G A C T G C A T A C T G A G C T A C T G A C T G C G T A G C A T A G C T A T C G T A C G

FOXH1/MA0479.1/Jaspar

Match Rank:2
Score:0.68
Offset:0
Orientation:reverse strand
Alignment:RGTAGATTGN-
TGTGGATTNNN
 C T A G A C T G G A C T C G T A A C T G C G T A A C G T A C G T C A T G A T C G A C G T
C G A T A C T G A C G T A C T G C A T G C G T A G C A T A C G T A T C G T C A G T C G A

Dux/MA0611.1/Jaspar

Match Rank:3
Score:0.66
Offset:2
Orientation:reverse strand
Alignment:RGTAGATTGN
--TTGATTGN
 C T A G A C T G G A C T C G T A A C T G C G T A A C G T A C G T C A T G A T C G
A C G T A C G T G A C T A C G T A C T G C G T A A C G T A C G T C T A G A T C G

PH0026.1_Duxbl/Jaspar

Match Rank:4
Score:0.64
Offset:-3
Orientation:reverse strand
Alignment:---RGTAGATTGN----
NNNNGTTGATTGGGTCG
 A C G T A C G T A C G T C T A G A C T G G A C T C G T A A C T G C G T A A C G T A C G T C A T G A T C G A C G T A C G T A C G T A C G T
A T G C C G T A A G T C A G T C T C A G G A C T C G A T C T A G C T G A A C G T A C G T C T A G T C A G T C A G G A C T G A T C T C A G

NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer

Match Rank:5
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:RGTAGATTGN
AACAGATGGC
 C T A G A C T G G A C T C G T A A C T G C G T A A C G T A C G T C A T G A T C G
C T G A T C G A A G T C G T C A A C T G T G C A G C A T A C T G A C T G A G T C

NeuroG2(bHLH)/Fibroblast-NeuroG2-ChIP-Seq(GSE75910)/Homer

Match Rank:6
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:RGTAGATTGN
AACAGATGGT
 C T A G A C T G G A C T C G T A A C T G C G T A A C G T A C G T C A T G A T C G
T C G A T C G A A G T C C G T A A C T G G T C A G C A T A C T G A C T G A G C T

Gfi1/MA0038.1/Jaspar

Match Rank:7
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:RGTAGATTGN
CNGTGATTTN
 C T A G A C T G G A C T C G T A A C T G C G T A A C G T A C G T C A T G A T C G
A T G C C G T A A T C G C G A T A C T G G C T A A C G T A C G T A C G T C T A G

PB0193.1_Tcfe2a_2/Jaspar

Match Rank:8
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---RGTAGATTGN----
AAGGCCAGATGGTCCGG
 A C G T A C G T A C G T C T A G A C T G G A C T C G T A A C T G C G T A A C G T A C G T C A T G A T C G A C G T A C G T A C G T A C G T
G C T A T C G A C T A G C A T G T A G C G T A C C T G A A C T G T C G A C G A T A C T G C A T G A G C T G A T C A T G C A T C G T C A G

Crx/MA0467.1/Jaspar

Match Rank:9
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-RGTAGATTGN
AAGAGGATTAG
 A C G T C T A G A C T G G A C T C G T A A C T G C G T A A C G T A C G T C A T G A T C G
T C G A C T G A C T A G T C G A C T A G A C T G G T C A A C G T A G C T C G T A C T A G

GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer

Match Rank:10
Score:0.59
Offset:3
Orientation:forward strand
Alignment:RGTAGATTGN-
---AGATAASR
 C T A G A C T G G A C T C G T A A C T G C G T A A C G T A C G T C A T G A T C G A C G T
A C G T A C G T A C G T G C T A A T C G G C T A G A C T G C T A T C G A T A G C T C G A