Information for 1-RCAGCTGYNDBYNNNN (Motif 1)

T C A G A G T C C G T A A T C G T A G C A C G T A C T G A G C T C G A T C A G T A G T C G A C T C G T A A C T G C G T A C A G T
Reverse Opposite:
G T C A G C A T T G A C G C A T C T G A T C A G G T C A G C T A T C G A A G T C C G T A A T C G T A G C A C G T A C T G A G T C
p-value:1e-141
log p-value:-3.263e+02
Information Content per bp:1.566
Number of Target Sequences with motif379.0
Percentage of Target Sequences with motif50.00%
Number of Background Sequences with motif5523.9
Percentage of Background Sequences with motif12.14%
Average Position of motif in Targets51.4 +/- 24.2bp
Average Position of motif in Background49.9 +/- 34.4bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.84
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer

Match Rank:1
Score:0.98
Offset:0
Orientation:reverse strand
Alignment:RCAGCTGYNDBYNNNN
GCAGCTGTNN------
 T C A G A G T C C G T A A T C G T A G C A C G T A C T G A G C T C G A T C A G T A G T C G A C T C G T A A C T G C G T A C A G T
T C A G A G T C C G T A A T C G T A G C A C G T A C T G A G C T A C T G G C A T A C G T A C G T A C G T A C G T A C G T A C G T

Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer

Match Rank:2
Score:0.97
Offset:0
Orientation:forward strand
Alignment:RCAGCTGYNDBYNNNN
NCAGCTGCTG------
 T C A G A G T C C G T A A T C G T A G C A C G T A C T G A G C T C G A T C A G T A G T C G A C T C G T A A C T G C G T A C A G T
T C G A A G T C C G T A A T C G A T G C C G A T A C T G A G T C A G C T A C T G A C G T A C G T A C G T A C G T A C G T A C G T

Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer

Match Rank:3
Score:0.97
Offset:0
Orientation:forward strand
Alignment:RCAGCTGYNDBYNNNN
ACAGCTGTTN------
 T C A G A G T C C G T A A T C G T A G C A C G T A C T G A G C T C G A T C A G T A G T C G A C T C G T A A C T G C G T A C A G T
T C G A A G T C C G T A A T C G T A G C A C G T A C T G A G C T A C G T A G T C A C G T A C G T A C G T A C G T A C G T A C G T

MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer

Match Rank:4
Score:0.96
Offset:-1
Orientation:forward strand
Alignment:-RCAGCTGYNDBYNNNN
AGCAGCTGCTNN-----
 A C G T T C A G A G T C C G T A A T C G T A G C A C G T A C T G A G C T C G A T C A G T A G T C G A C T C G T A A C T G C G T A C A G T
C T G A T C A G A G T C C G T A A T C G A T G C C G A T A C T G A G T C G A C T A T C G A G T C A C G T A C G T A C G T A C G T A C G T

Myod1/MA0499.1/Jaspar

Match Rank:5
Score:0.96
Offset:-1
Orientation:forward strand
Alignment:-RCAGCTGYNDBYNNNN
TGCAGCTGTCCCT----
 A C G T T C A G A G T C C G T A A T C G T A G C A C G T A C T G A G C T C G A T C A G T A G T C G A C T C G T A A C T G C G T A C A G T
G C A T T A C G A G T C C G T A A T C G A G T C A C G T A C T G A G C T A G T C T A G C A G T C A G C T A C G T A C G T A C G T A C G T

Myog/MA0500.1/Jaspar

Match Rank:6
Score:0.96
Offset:-2
Orientation:reverse strand
Alignment:--RCAGCTGYNDBYNNNN
NNGCAGCTGTC-------
 A C G T A C G T T C A G A G T C C G T A A T C G T A G C A C G T A C T G A G C T C G A T C A G T A G T C G A C T C G T A A C T G C G T A C A G T
A T G C G A C T A T C G A G T C C G T A A T C G A G T C A C G T A C T G A G C T A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Tcf12/MA0521.1/Jaspar

Match Rank:7
Score:0.95
Offset:-2
Orientation:reverse strand
Alignment:--RCAGCTGYNDBYNNNN
NNGCAGCTGTT-------
 A C G T A C G T T C A G A G T C C G T A A T C G T A G C A C G T A C T G A G C T C G A T C A G T A G T C G A C T C G T A A C T G C G T A C A G T
A T G C G C A T A T C G A G T C C G T A A T C G A G T C A C G T A C T G A G C T A G C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer

Match Rank:8
Score:0.95
Offset:-1
Orientation:reverse strand
Alignment:-RCAGCTGYNDBYNNNN
NVCAGCTGBBNN-----
 A C G T T C A G A G T C C G T A A T C G T A G C A C G T A C T G A G C T C G A T C A G T A G T C G A C T C G T A A C T G C G T A C A G T
T C G A T A C G G T A C C G T A A T C G T G A C C G A T A C T G A T G C A T G C T C A G G A T C A C G T A C G T A C G T A C G T A C G T

MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer

Match Rank:9
Score:0.95
Offset:1
Orientation:reverse strand
Alignment:RCAGCTGYNDBYNNNN
-CAGCTGTT-------
 T C A G A G T C C G T A A T C G T A G C A C G T A C T G A G C T C G A T C A G T A G T C G A C T C G T A A C T G C G T A C A G T
A C G T A G T C C G T A A T C G A G T C A C G T A C T G A G C T A G C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer

Match Rank:10
Score:0.95
Offset:0
Orientation:reverse strand
Alignment:RCAGCTGYNDBYNNNN
ACAGCTGTTV------
 T C A G A G T C C G T A A T C G T A G C A C G T A C T G A G C T C G A T C A G T A G T C G A C T C G T A A C T G C G T A C A G T
T C G A A G T C C G T A T A C G A T G C A C G T A C T G A G C T A G C T T G C A A C G T A C G T A C G T A C G T A C G T A C G T