Information for 10-CTGCACTTAAATCAAA (Motif 7)

A G T C C G A T A C T G G T A C G T C A T A G C C G A T A C G T C G T A G T C A T C G A C G A T T A G C G T C A C T G A C T G A
Reverse Opposite:
G A C T G A C T C A G T A T C G G C T A A G C T C A G T C G A T G T C A C G T A A T C G C A G T C A T G A G T C C G T A T C A G
p-value:1e-12
log p-value:-2.921e+01
Information Content per bp:1.645
Number of Target Sequences with motif16.0
Percentage of Target Sequences with motif2.11%
Number of Background Sequences with motif75.5
Percentage of Background Sequences with motif0.16%
Average Position of motif in Targets58.0 +/- 23.5bp
Average Position of motif in Background53.9 +/- 24.3bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

ISL2/MA0914.1/Jaspar

Match Rank:1
Score:0.63
Offset:2
Orientation:forward strand
Alignment:CTGCACTTAAATCAAA
--GCACTTAA------
 A G T C C G A T A C T G G T A C G T C A T A G C C G A T A C G T C G T A G T C A T C G A C G A T T A G C G T C A C T G A C T G A
A C G T A C G T T A C G G A T C G C T A G T A C C G A T G A C T G C T A C T G A A C G T A C G T A C G T A C G T A C G T A C G T

Hoxd9/MA0913.1/Jaspar

Match Rank:2
Score:0.57
Offset:2
Orientation:forward strand
Alignment:CTGCACTTAAATCAAA
--GCAATAAAAA----
 A G T C C G A T A C T G G T A C G T C A T A G C C G A T A C G T C G T A G T C A T C G A C G A T T A G C G T C A C T G A C T G A
A C G T A C G T T C A G G A T C T G C A C T G A C G A T G C T A G C T A G C T A C G T A G C T A A C G T A C G T A C G T A C G T

NKX3-2/MA0122.2/Jaspar

Match Rank:3
Score:0.56
Offset:1
Orientation:forward strand
Alignment:CTGCACTTAAATCAAA
-ACCACTTAA------
 A G T C C G A T A C T G G T A C G T C A T A G C C G A T A C G T C G T A G T C A T C G A C G A T T A G C G T C A C T G A C T G A
A C G T T C G A T A G C G A T C G C T A G T A C A G C T G A C T G C T A C T G A A C G T A C G T A C G T A C G T A C G T A C G T

PH0056.1_Hoxa9/Jaspar

Match Rank:4
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-CTGCACTTAAATCAAA
ACGGCCATAAAATTAAT
 A C G T A G T C C G A T A C T G G T A C G T C A T A G C C G A T A C G T C G T A G T C A T C G A C G A T T A G C G T C A C T G A C T G A
C T G A T G A C C T A G A T C G G A T C G T A C C T G A C G A T G C T A C G T A C G T A C G T A G C A T C A G T C G T A C T G A C G A T

PH0063.1_Hoxb8/Jaspar

Match Rank:5
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--CTGCACTTAAATCAAA
ACCGGCAATTAATAAA--
 A C G T A C G T A G T C C G A T A C T G G T A C G T C A T A G C C G A T A C G T C G T A G T C A T C G A C G A T T A G C G T C A C T G A C T G A
G C T A T A G C A G T C C A T G C T A G G A T C G T C A C G T A C G A T G C A T C G T A G C T A G A C T G T C A C T G A C G T A A C G T A C G T

Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer

Match Rank:6
Score:0.55
Offset:2
Orientation:reverse strand
Alignment:CTGCACTTAAATCAAA
--BCMATTAG------
 A G T C C G A T A C T G G T A C G T C A T A G C C G A T A C G T C G T A G T C A T C G A C G A T T A G C G T C A C T G A C T G A
A C G T A C G T A C T G A G T C G T C A G T C A A C G T A G C T C G T A T C A G A C G T A C G T A C G T A C G T A C G T A C G T

CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer

Match Rank:7
Score:0.55
Offset:-3
Orientation:forward strand
Alignment:---CTGCACTTAAATCAAA-
NTNATGCAAYMNNHTGMAAY
 A C G T A C G T A C G T A G T C C G A T A C T G G T A C G T C A T A G C C G A T A C G T C G T A G T C A T C G A C G A T T A G C G T C A C T G A C T G A A C G T
T G C A G C A T C G A T C G T A C A G T A C T G G T A C C G T A C T G A A G C T G T C A A C T G C T A G G T C A C G A T A C T G G T A C T G C A C G T A A G C T

Hmx1/MA0896.1/Jaspar

Match Rank:8
Score:0.54
Offset:-2
Orientation:forward strand
Alignment:--CTGCACTTAAATCAAA
ACAAGCAATTAATGAAT-
 A C G T A C G T A G T C C G A T A C T G G T A C G T C A T A G C C G A T A C G T C G T A G T C A T C G A C G A T T A G C G T C A C T G A C T G A
T G C A T A G C T G C A C T G A T C A G G A T C C T G A G T C A A C G T G A C T C G T A C G T A C G A T T A C G T G C A C G T A A C G T A C G T

PH0041.1_Hmx1/Jaspar

Match Rank:9
Score:0.54
Offset:-2
Orientation:forward strand
Alignment:--CTGCACTTAAATCAAA
ACAAGCAATTAATGAAT-
 A C G T A C G T A G T C C G A T A C T G G T A C G T C A T A G C C G A T A C G T C G T A G T C A T C G A C G A T T A G C G T C A C T G A C T G A
T G C A T A G C T G C A C T G A T C A G G A T C C T G A G T C A A C G T G A C T C G T A C G T A C G A T T A C G T G C A C G T A A C G T A C G T

Nkx3-1/MA0124.2/Jaspar

Match Rank:10
Score:0.54
Offset:1
Orientation:forward strand
Alignment:CTGCACTTAAATCAAA
-ACCACTTAA------
 A G T C C G A T A C T G G T A C G T C A T A G C C G A T A C G T C G T A G T C A T C G A C G A T T A G C G T C A C T G A C T G A
A C G T T C G A T A G C A G T C G C T A G T A C A G C T A G C T G C T A C T G A A C G T A C G T A C G T A C G T A C G T A C G T