Information for 7-AGACATAAATCTBCCT (Motif 4)

C G T A C T A G G T C A A G T C C T G A G A C T C G T A C T G A C G T A A C G T T G A C A C G T A T G C A G T C A G T C A G C T
Reverse Opposite:
C T G A C T A G A C T G T A C G C G T A A C T G C G T A A C G T G A C T C G A T C T G A A G C T C T A G A C G T A G T C A C G T
p-value:1e-14
log p-value:-3.302e+01
Information Content per bp:1.769
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif1.00%
Number of Background Sequences with motif2.1
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets42.2 +/- 19.2bp
Average Position of motif in Background48.4 +/- 14.4bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.14
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hoxc9/MA0485.1/Jaspar

Match Rank:1
Score:0.63
Offset:0
Orientation:forward strand
Alignment:AGACATAAATCTBCCT
GGCCATAAATCAC---
 C G T A C T A G G T C A A G T C C T G A G A C T C G T A C T G A C G T A A C G T T G A C A C G T A T G C A G T C A G T C A G C T
C T A G T A C G G A T C G T A C C T G A A G C T T G C A C G T A G T C A C G A T G A T C G C T A A G T C A C G T A C G T A C G T

GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer

Match Rank:2
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-AGACATAAATCTBCCT
NAGATWNBNATCTNN--
 A C G T C G T A C T A G G T C A A G T C C T G A G A C T C G T A C T G A C G T A A C G T T G A C A C G T A T G C A G T C A G T C A G C T
A T G C C G T A A C T G C G T A A C G T G C T A T C G A A G C T C G A T C G T A A C G T A G T C C G A T A C T G G A T C A C G T A C G T

HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer

Match Rank:3
Score:0.61
Offset:0
Orientation:forward strand
Alignment:AGACATAAATCTBCCT
GGCCATAAATCA----
 C G T A C T A G G T C A A G T C C T G A G A C T C G T A C T G A C G T A A C G T T G A C A C G T A T G C A G T C A G T C A G C T
C T A G T A C G A G T C G T A C T C G A A C G T G T C A G C T A G C T A C G A T A G T C G C T A A C G T A C G T A C G T A C G T

Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer

Match Rank:4
Score:0.61
Offset:0
Orientation:forward strand
Alignment:AGACATAAATCTBCCT
GGCCATAAATCA----
 C G T A C T A G G T C A A G T C C T G A G A C T C G T A C T G A C G T A A C G T T G A C A C G T A T G C A G T C A G T C A G C T
C T A G T A C G G A T C G T A C C T G A A G C T T G C A G C T A C G T A G C A T G A T C G C T A A C G T A C G T A C G T A C G T

Hoxa9/MA0594.1/Jaspar

Match Rank:5
Score:0.60
Offset:1
Orientation:forward strand
Alignment:AGACATAAATCTBCCT
-GCCATAAATCA----
 C G T A C T A G G T C A A G T C C T G A G A C T C G T A C T G A C G T A A C G T T G A C A C G T A T G C A G T C A G T C A G C T
A C G T T A C G G A T C G T A C T C G A A C G T T G C A G C T A G T C A C G A T G A T C G C T A A C G T A C G T A C G T A C G T

SD0003.1_at_AC_acceptor/Jaspar

Match Rank:6
Score:0.58
Offset:5
Orientation:forward strand
Alignment:AGACATAAATCTBCCT
-----AAGATATCCTT
 C G T A C T A G G T C A A G T C C T G A G A C T C G T A C T G A C G T A A C G T T G A C A C G T A T G C A G T C A G T C A G C T
A C G T A C G T A C G T A C G T A C G T G C T A G C T A T C A G C G T A A C G T C T G A C G A T A T G C G A T C G C A T A G C T

Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer

Match Rank:7
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:AGACATAAATCTBCCT
RGCCATYAATCA----
 C G T A C T A G G T C A A G T C C T G A G A C T C G T A C T G A C G T A A C G T T G A C A C G T A T G C A G T C A G T C A G C T
C T A G T A C G G A T C T G A C T C G A A C G T G A C T G C T A T C G A A G C T G A T C G C T A A C G T A C G T A C G T A C G T

OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:8
Score:0.55
Offset:4
Orientation:forward strand
Alignment:AGACATAAATCTBCCT---
----ATGAATATTCATGAG
 C G T A C T A G G T C A A G T C C T G A G A C T C G T A C T G A C G T A A C G T T G A C A C G T A T G C A G T C A G T C A G C T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T G C T A A C G T C T A G G T C A C G T A A C G T C G T A C G A T C A G T A G T C C G T A A C G T C T A G C T G A A T C G

Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:9
Score:0.55
Offset:4
Orientation:forward strand
Alignment:AGACATAAATCTBCCT
----ATGMATATDC--
 C G T A C T A G G T C A A G T C C T G A G A C T C G T A C T G A C G T A A C G T T G A C A C G T A T G C A G T C A G T C A G C T
A C G T A C G T A C G T A C G T G C T A A C G T C T A G G T A C G C T A G A C T C T G A G C A T C A T G G A T C A C G T A C G T

OCT:OCT(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer

Match Rank:10
Score:0.55
Offset:2
Orientation:reverse strand
Alignment:AGACATAAATCTBCCT-
--AYATGYATATGCATR
 C G T A C T A G G T C A A G T C C T G A G A C T C G T A C T G A C G T A A C G T T G A C A C G T A T G C A G T C A G T C A G C T A C G T
A C G T A C G T C T G A G A C T C T G A G A C T C T A G G A T C C T G A G A C T C T G A G A C T C T A G G A T C C T G A G C A T C T A G