Information for 15-GCAATAGTCACCA (Motif 23)

C T A G A G T C G C T A C G T A A G C T C T G A A C T G C G A T G A T C C G T A A T G C A G T C C G T A
Reverse Opposite:
A C G T C T A G A T C G C G A T C T A G C G T A A G T C A G C T C T G A C G A T C A G T A C T G A G T C
p-value:1e-8
log p-value:-2.061e+01
Information Content per bp:1.760
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif1.00%
Number of Background Sequences with motif12.4
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets53.6 +/- 30.7bp
Average Position of motif in Background44.6 +/- 32.2bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SOX9/MA0077.1/Jaspar

Match Rank:1
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--GCAATAGTCACCA
GAACAATGG------
 A C G T A C G T C T A G A G T C G C T A C G T A A G C T C T G A A C T G C G A T G A T C C G T A A T G C A G T C C G T A
C T A G C G T A G C T A A G T C G C T A G C T A C G A T C T A G T A C G A C G T A C G T A C G T A C G T A C G T A C G T

PB0159.1_Rfx4_2/Jaspar

Match Rank:2
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-GCAATAGTCACCA-
TACCCTAGTTACCGA
 A C G T C T A G A G T C G C T A C G T A A G C T C T G A A C T G C G A T G A T C C G T A A T G C A G T C C G T A A C G T
G C A T G T C A A T G C A T G C G T A C C A G T T C G A A C T G C G A T A C G T C G T A A G T C T A G C T A C G G T C A

HMBOX1/MA0895.1/Jaspar

Match Rank:3
Score:0.55
Offset:2
Orientation:forward strand
Alignment:GCAATAGTCACCA
--ACTAGTTAAC-
 C T A G A G T C G C T A C G T A A G C T C T G A A C T G C G A T G A T C C G T A A T G C A G T C C G T A
A C G T A C G T T G C A A G T C C G A T C T G A A T C G C G A T G C A T C G T A G T C A T A G C A C G T

RFX3/MA0798.1/Jaspar

Match Rank:4
Score:0.54
Offset:-4
Orientation:forward strand
Alignment:----GCAATAGTCACCA
CGTTGCCATGGCAACG-
 A C G T A C G T A C G T A C G T C T A G A G T C G C T A C G T A A G C T C T G A A C T G C G A T G A T C C G T A A T G C A G T C C G T A
A T G C C T A G G A C T G C A T C T A G A G T C A G T C C G T A G C A T T C A G T C A G G A T C C G T A T C G A G A T C T A C G A C G T

RFX5/MA0510.2/Jaspar

Match Rank:5
Score:0.54
Offset:-4
Orientation:forward strand
Alignment:----GCAATAGTCACCA
CGTTGCCATGGCAACG-
 A C G T A C G T A C G T A C G T C T A G A G T C G C T A C G T A A G C T C T G A A C T G C G A T G A T C C G T A A T G C A G T C C G T A
A T G C C T A G A G C T G A C T C T A G A G T C A G T C C G T A G C A T T C A G T C A G G A T C C T G A T G C A G A T C T A C G A C G T

X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:6
Score:0.54
Offset:-2
Orientation:reverse strand
Alignment:--GCAATAGTCACCA
TTGCCATGGCAACC-
 A C G T A C G T C T A G A G T C G C T A C G T A A G C T C T G A A C T G C G A T G A T C C G T A A T G C A G T C C G T A
A G C T G A C T C A T G A G T C G A T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A G A T C G T A C A C G T

Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:7
Score:0.54
Offset:-2
Orientation:reverse strand
Alignment:--GCAATAGTCACCA
TTGCCATGGCAACN-
 A C G T A C G T C T A G A G T C G C T A C G T A A G C T C T G A A C T G C G A T G A T C C G T A A T G C A G T C C G T A
A G C T G A C T C A T G A G T C A G T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A A G T C T G A C A C G T

RFX4/MA0799.1/Jaspar

Match Rank:8
Score:0.53
Offset:-4
Orientation:forward strand
Alignment:----GCAATAGTCACCA
CGTTGCCATGGCAACG-
 A C G T A C G T A C G T A C G T C T A G A G T C G C T A C G T A A G C T C T G A A C T G C G A T G A T C C G T A A T G C A G T C C G T A
A T G C C T A G G C A T G C A T C T A G A G T C A G T C C G T A G C A T T C A G T C A G G A T C C G T A T C G A G A T C T A C G A C G T

PB0109.1_Bbx_2/Jaspar

Match Rank:9
Score:0.53
Offset:1
Orientation:forward strand
Alignment:GCAATAGTCACCA-----
-TGATTGTTAACAGTTGG
 C T A G A G T C G C T A C G T A A G C T C T G A A C T G C G A T G A T C C G T A A T G C A G T C C G T A A C G T A C G T A C G T A C G T A C G T
A C G T G A C T T C A G G C T A G A C T A C G T C A T G C A G T A G C T T C G A G T C A G T A C T C G A A T C G G C A T A C G T C T A G T C A G

RFX2/MA0600.2/Jaspar

Match Rank:10
Score:0.53
Offset:-4
Orientation:reverse strand
Alignment:----GCAATAGTCACCA
CGTTGCCATGGCAACG-
 A C G T A C G T A C G T A C G T C T A G A G T C G C T A C G T A A G C T C T G A A C T G C G A T G A T C C G T A A T G C A G T C C G T A
A T G C C T A G G A C T G C A T C T A G A G T C A G T C C G T A G C A T T C A G T C A G G A T C C G T A C T G A A G T C T A C G A C G T