Information for 3-RCCACWDHHN (Motif 2)

C T G A T G A C G T A C G T C A T A G C G C T A C G A T G T C A G C A T C G A T
Reverse Opposite:
G C T A C G T A C A G T G C T A C G A T A T C G C A G T C A T G A C T G G A C T
p-value:1e-32
log p-value:-7.403e+01
Information Content per bp:1.442
Number of Target Sequences with motif88.0
Percentage of Target Sequences with motif12.63%
Number of Background Sequences with motif1219.7
Percentage of Background Sequences with motif2.67%
Average Position of motif in Targets51.6 +/- 27.6bp
Average Position of motif in Background48.9 +/- 30.7bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.01
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer

Match Rank:1
Score:0.87
Offset:-3
Orientation:forward strand
Alignment:---RCCACWDHHN
NWAACCACADNN-
 A C G T A C G T A C G T C T G A T G A C G T A C G T C A T A G C G C T A C G A T G T C A G C A T C G A T
T G A C G C T A T C G A T G C A A G T C A G T C C G T A A G T C C G T A C T G A G C T A G T A C A C G T

RUNX1/MA0002.2/Jaspar

Match Rank:2
Score:0.83
Offset:-2
Orientation:reverse strand
Alignment:--RCCACWDHHN
AAACCACAGAN-
 A C G T A C G T C T G A T G A C G T A C G T C A T A G C G C T A C G A T G T C A G C A T C G A T
G C T A C T G A T C G A T G A C G T A C C T G A T A G C G C T A T C A G T C G A T G A C A C G T

ZNF354C/MA0130.1/Jaspar

Match Rank:3
Score:0.82
Offset:-1
Orientation:forward strand
Alignment:-RCCACWDHHN
ATCCAC-----
 A C G T C T G A T G A C G T A C G T C A T A G C G C T A C G A T G T C A G C A T C G A T
T G C A G C A T A G T C A G T C C G T A A T G C A C G T A C G T A C G T A C G T A C G T

RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:4
Score:0.82
Offset:-2
Orientation:reverse strand
Alignment:--RCCACWDHHN
AAACCACAGC--
 A C G T A C G T C T G A T G A C G T A C G T C A T A G C G C T A C G A T G T C A G C A T C G A T
G C T A T C G A T G C A T G A C G T A C T G C A A G T C C T G A C T A G T G A C A C G T A C G T

RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer

Match Rank:5
Score:0.81
Offset:-2
Orientation:forward strand
Alignment:--RCCACWDHHN
AAACCACANN--
 A C G T A C G T C T G A T G A C G T A C G T C A T A G C G C T A C G A T G T C A G C A T C G A T
G C T A C T G A T C G A A G T C A G T C C T G A A G T C G T C A C T G A T G C A A C G T A C G T

RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer

Match Rank:6
Score:0.79
Offset:-3
Orientation:forward strand
Alignment:---RCCACWDHHN
NAAACCACAG---
 A C G T A C G T A C G T C T G A T G A C G T A C G T C A T A G C G C T A C G A T G T C A G C A T C G A T
T A G C G C T A T C G A C T G A A G T C A G T C C T G A A G T C C G T A C T A G A C G T A C G T A C G T

ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer

Match Rank:7
Score:0.75
Offset:0
Orientation:reverse strand
Alignment:RCCACWDHHN--
ACCACATCCTGT
 C T G A T G A C G T A C G T C A T A G C G C T A C G A T G T C A G C A T C G A T A C G T A C G T
T G C A A G T C A G T C C G T A A G T C C G T A A C G T A G T C A G T C C A G T A T C G A G C T

Nkx3-1/MA0124.2/Jaspar

Match Rank:8
Score:0.75
Offset:0
Orientation:forward strand
Alignment:RCCACWDHHN
ACCACTTAA-
 C T G A T G A C G T A C G T C A T A G C G C T A C G A T G T C A G C A T C G A T
T C G A T A G C A G T C G C T A G T A C A G C T A G C T G C T A C T G A A C G T

NKX2-3/MA0672.1/Jaspar

Match Rank:9
Score:0.73
Offset:0
Orientation:forward strand
Alignment:RCCACWDHHN
ACCACTTGAA
 C T G A T G A C G T A C G T C A T A G C G C T A C G A T G T C A G C A T C G A T
T G C A T A G C G A T C G C T A G T A C A C G T A G C T T C A G C G T A T C G A

NKX3-2/MA0122.2/Jaspar

Match Rank:10
Score:0.72
Offset:0
Orientation:forward strand
Alignment:RCCACWDHHN
ACCACTTAA-
 C T G A T G A C G T A C G T C A T A G C G C T A C G A T G T C A G C A T C G A T
T C G A T A G C G A T C G C T A G T A C A G C T G A C T G C T A C T G A A C G T