Information for 11-CTGCACWTMAAYSARM (Motif 9)

G T A C A C G T A C T G A G T C C G T A A G T C C G A T C G A T G T C A C G T A C T G A A G C T T A G C C G T A C T G A G T C A
Reverse Opposite:
A C G T A G C T A C G T A T C G C T G A A G C T A C G T A C G T C G T A C G T A C T A G A C G T A C T G G T A C C G T A A C T G
p-value:1e-12
log p-value:-2.793e+01
Information Content per bp:1.838
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.92%
Number of Background Sequences with motif4.4
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets51.7 +/- 16.3bp
Average Position of motif in Background54.3 +/- 24.1bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

ISL2/MA0914.1/Jaspar

Match Rank:1
Score:0.62
Offset:2
Orientation:forward strand
Alignment:CTGCACWTMAAYSARM
--GCACTTAA------
 G T A C A C G T A C T G A G T C C G T A A G T C C G A T C G A T G T C A C G T A C T G A A G C T T A G C C G T A C T G A G T C A
A C G T A C G T T A C G G A T C G C T A G T A C C G A T G A C T G C T A C T G A A C G T A C G T A C G T A C G T A C G T A C G T

NKX2-8/MA0673.1/Jaspar

Match Rank:2
Score:0.61
Offset:2
Orientation:forward strand
Alignment:CTGCACWTMAAYSARM
--CCACTTGAA-----
 G T A C A C G T A C T G A G T C C G T A A G T C C G A T C G A T G T C A C G T A C T G A A G C T T A G C C G T A C T G A G T C A
A C G T A C G T T A G C G A T C G T C A G A T C A G C T G A C T T A C G G C T A T C G A A C G T A C G T A C G T A C G T A C G T

PB0104.1_Zscan4_1/Jaspar

Match Rank:3
Score:0.60
Offset:-5
Orientation:forward strand
Alignment:-----CTGCACWTMAAYSARM
TACATGTGCACATAAAA----
 A C G T A C G T A C G T A C G T A C G T G T A C A C G T A C T G A G T C C G T A A G T C C G A T C G A T G T C A C G T A C T G A A G C T T A G C C G T A C T G A G T C A
C A G T G T C A T G A C C T G A C G A T T C A G A G C T C T A G A G T C C T G A A G T C G C T A A G C T G C T A G C T A C G T A G T C A A C G T A C G T A C G T A C G T

NKX2-3/MA0672.1/Jaspar

Match Rank:4
Score:0.60
Offset:1
Orientation:forward strand
Alignment:CTGCACWTMAAYSARM
-ACCACTTGAA-----
 G T A C A C G T A C T G A G T C C G T A A G T C C G A T C G A T G T C A C G T A C T G A A G C T T A G C C G T A C T G A G T C A
A C G T T G C A T A G C G A T C G C T A G T A C A C G T A G C T T C A G C G T A T C G A A C G T A C G T A C G T A C G T A C G T

NKX3-2/MA0122.2/Jaspar

Match Rank:5
Score:0.58
Offset:1
Orientation:forward strand
Alignment:CTGCACWTMAAYSARM
-ACCACTTAA------
 G T A C A C G T A C T G A G T C C G T A A G T C C G A T C G A T G T C A C G T A C T G A A G C T T A G C C G T A C T G A G T C A
A C G T T C G A T A G C G A T C G C T A G T A C A G C T G A C T G C T A C T G A A C G T A C G T A C G T A C G T A C G T A C G T

PB0026.1_Gm397_1/Jaspar

Match Rank:6
Score:0.58
Offset:-5
Orientation:forward strand
Alignment:-----CTGCACWTMAAYSARM
CAGATGTGCACATACGT----
 A C G T A C G T A C G T A C G T A C G T G T A C A C G T A C T G A G T C C G T A A G T C C G A T C G A T G T C A C G T A C T G A A G C T T A G C C G T A C T G A G T C A
G T A C G C T A C A T G C G T A C G A T T A C G A G C T C T A G A G T C C T G A A T G C G C T A A G C T G T C A G T A C C A T G G A C T A C G T A C G T A C G T A C G T

PBX1/MA0070.1/Jaspar

Match Rank:7
Score:0.57
Offset:4
Orientation:forward strand
Alignment:CTGCACWTMAAYSARM
----CCATCAATCAAA
 G T A C A C G T A C T G A G T C C G T A A G T C C G A T C G A T G T C A C G T A C T G A A G C T T A G C C G T A C T G A G T C A
A C G T A C G T A C G T A C G T G A T C A G T C T C G A G A C T A G T C G T C A C G T A A C G T A G T C G C T A C G T A C G T A

Hoxa9/MA0594.1/Jaspar

Match Rank:8
Score:0.56
Offset:3
Orientation:forward strand
Alignment:CTGCACWTMAAYSARM
---GCCATAAATCA--
 G T A C A C G T A C T G A G T C C G T A A G T C C G A T C G A T G T C A C G T A C T G A A G C T T A G C C G T A C T G A G T C A
A C G T A C G T A C G T T A C G G A T C G T A C T C G A A C G T T G C A G C T A G T C A C G A T G A T C G C T A A C G T A C G T

Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer

Match Rank:9
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:CTGCACWTMAAYSARM
-NSCACTYVAV-----
 G T A C A C G T A C T G A G T C C G T A A G T C C G A T C G A T G T C A C G T A C T G A A G C T T A G C C G T A C T G A G T C A
A C G T C T A G T A G C A G T C G C T A G A T C A C G T G A T C T C G A C T G A T A C G A C G T A C G T A C G T A C G T A C G T

Nkx3-1/MA0124.2/Jaspar

Match Rank:10
Score:0.56
Offset:1
Orientation:forward strand
Alignment:CTGCACWTMAAYSARM
-ACCACTTAA------
 G T A C A C G T A C T G A G T C C G T A A G T C C G A T C G A T G T C A C G T A C T G A A G C T T A G C C G T A C T G A G T C A
A C G T T C G A T A G C A G T C G C T A G T A C A G C T A G C T G C T A C T G A A C G T A C G T A C G T A C G T A C G T A C G T