Information for 9-AAAGSCACACTAAAGA (Motif 7)

G T C A C T G A C T G A A T C G T A G C A G T C G T C A A T G C T C G A G T A C C G A T G T C A C T G A C T G A C T A G C G T A
Reverse Opposite:
C G A T A G T C G A C T A G C T A C G T G C T A C A T G A G C T T A C G C A G T T C A G A T C G T A G C G A C T A G C T A C G T
p-value:1e-12
log p-value:-2.854e+01
Information Content per bp:1.687
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif1.32%
Number of Background Sequences with motif17.8
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets50.3 +/- 24.2bp
Average Position of motif in Background51.0 +/- 23.4bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0208.1_Zscan4_2/Jaspar

Match Rank:1
Score:0.55
Offset:0
Orientation:forward strand
Alignment:AAAGSCACACTAAAGA
CGAAGCACACAAAATA
 G T C A C T G A C T G A A T C G T A G C A G T C G T C A A T G C T C G A G T A C C G A T G T C A C T G A C T G A C T A G C G T A
G T A C T A C G G C T A T C G A C T A G T G A C C G T A G T A C C T G A G A T C G C T A G T C A G T C A G C T A G C A T T C G A

PB0166.1_Sox12_2/Jaspar

Match Rank:2
Score:0.54
Offset:2
Orientation:forward strand
Alignment:AAAGSCACACTAAAGA--
--AAACAGACAAAGGAAT
 G T C A C T G A C T G A A T C G T A G C A G T C G T C A A T G C T C G A G T A C C G A T G T C A C T G A C T G A C T A G C G T A A C G T A C G T
A C G T A C G T T G C A T G C A C G T A A G C T C T G A A T C G C G T A A G T C G C T A T C G A G C T A T A C G T C A G T G C A C G T A G A C T

NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer

Match Rank:3
Score:0.49
Offset:2
Orientation:reverse strand
Alignment:AAAGSCACACTAAAGA--
--TGCCAAAATAAACANN
 G T C A C T G A C T G A A T C G T A G C A G T C G T C A A T G C T C G A G T A C C G A T G T C A C T G A C T G A C T A G C G T A A C G T A C G T
A C G T A C G T C G A T A C T G T A G C G T A C C G T A C T G A C T G A C T G A G A C T G T C A G T C A C T G A A G T C C G T A C T G A G C T A

FOXH1/MA0479.1/Jaspar

Match Rank:4
Score:0.49
Offset:-2
Orientation:forward strand
Alignment:--AAAGSCACACTAAAGA
TCCAATCCACA-------
 A C G T A C G T G T C A C T G A C T G A A T C G T A G C A G T C G T C A A T G C T C G A G T A C C G A T G T C A C T G A C T G A C T A G C G T A
A G C T A G T C T A G C C G T A C G T A A C G T G T A C G T A C C G T A A G T C C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Rarb(var.2)/MA0858.1/Jaspar

Match Rank:5
Score:0.48
Offset:1
Orientation:forward strand
Alignment:AAAGSCACACTAAAGA--
-AGGTCAACTAAAGGTCA
 G T C A C T G A C T G A A T C G T A G C A G T C G T C A A T G C T C G A G T A C C G A T G T C A C T G A C T G A C T A G C G T A A C G T A C G T
A C G T T C G A A T C G C A T G A G C T A T G C C T G A G T C A T G A C A G C T C G T A C T G A C T G A T A C G A C T G A C G T A G T C C T G A

NR4A2/MA0160.1/Jaspar

Match Rank:6
Score:0.48
Offset:0
Orientation:forward strand
Alignment:AAAGSCACACTAAAGA
AAGGTCAC--------
 G T C A C T G A C T G A A T C G T A G C A G T C G T C A A T G C T C G A G T A C C G A T G T C A C T G A C T G A C T A G C G T A
C T G A C T G A A C T G C T A G G A C T A G T C C G T A T G A C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer

Match Rank:7
Score:0.48
Offset:-1
Orientation:forward strand
Alignment:-AAAGSCACACTAAAGA
CAAGGHCANV-------
 A C G T G T C A C T G A C T G A A T C G T A G C A G T C G T C A A T G C T C G A G T A C C G A T G T C A C T G A C T G A C T A G C G T A
T G A C C G T A C T G A A C T G A C T G G A C T G A T C T G C A G T A C T A C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0168.1_Sox14_2/Jaspar

Match Rank:8
Score:0.48
Offset:3
Orientation:forward strand
Alignment:AAAGSCACACTAAAGA--
---CTCACACAATGGCGC
 G T C A C T G A C T G A A T C G T A G C A G T C G T C A A T G C T C G A G T A C C G A T G T C A C T G A C T G A C T A G C G T A A C G T A C G T
A C G T A C G T A C G T A G T C A C G T A G T C T C G A T A G C C G T A A T G C G T C A G T C A G C A T C T A G T C A G G T A C A C T G A T G C

RARA(var.2)/MA0730.1/Jaspar

Match Rank:9
Score:0.48
Offset:1
Orientation:forward strand
Alignment:AAAGSCACACTAAAGA--
-AGGTCATGCAAAGGTCA
 G T C A C T G A C T G A A T C G T A G C A G T C G T C A A T G C T C G A G T A C C G A T G T C A C T G A C T G A C T A G C G T A A C G T A C G T
A C G T T C G A A C T G A C T G A C G T G A T C T G C A G A C T A T C G A G T C C G T A T C G A T C G A C A T G A C T G A C G T A T G C C T G A

Nr2e1/MA0676.1/Jaspar

Match Rank:10
Score:0.48
Offset:-1
Orientation:forward strand
Alignment:-AAAGSCACACTAAAGA
AAAAGTCAA--------
 A C G T G T C A C T G A C T G A A T C G T A G C A G T C G T C A A T G C T C G A G T A C C G A T G T C A C T G A C T G A C T A G C G T A
G C T A C T G A C T G A C T G A C T A G A G C T A G T C C G T A G C T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T