Information for 22-CTGCCCTVDCAAC (Motif 35)

A G T C A C G T A C T G A G T C A G T C G T A C A C G T T C G A C A T G A G T C C G T A C G T A A G T C
Reverse Opposite:
C T A G C G A T A C G T A C T G G A T C A C G T C G T A A C T G C T A G A C T G A G T C C G T A A C T G
p-value:1e-7
log p-value:-1.842e+01
Information Content per bp:1.850
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.79%
Number of Background Sequences with motif9.2
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets53.3 +/- 28.5bp
Average Position of motif in Background26.4 +/- 16.8bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

THAP1/MA0597.1/Jaspar

Match Rank:1
Score:0.68
Offset:0
Orientation:forward strand
Alignment:CTGCCCTVDCAAC
CTGCCCGCA----
 A G T C A C G T A C T G A G T C A G T C G T A C A C G T T C G A C A T G A G T C C G T A C G T A A G T C
A G T C G A C T C A T G G A T C G T A C G T A C C A T G A G T C G T C A A C G T A C G T A C G T A C G T

PB0055.1_Rfx4_1/Jaspar

Match Rank:2
Score:0.65
Offset:1
Orientation:forward strand
Alignment:CTGCCCTVDCAAC---
-TACCATAGCAACGGT
 A G T C A C G T A C T G A G T C A G T C G T A C A C G T T C G A C A T G A G T C C G T A C G T A A G T C A C G T A C G T A C G T
A C G T A G C T G T C A T A G C A T G C G T C A A G C T T C G A C T A G G A T C C T G A C T G A A G T C T A C G T C A G C G A T

Rfx1/MA0509.1/Jaspar

Match Rank:3
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-CTGCCCTVDCAAC
GTTGCCATGGCAAC
 A C G T A G T C A C G T A C T G A G T C A G T C G T A C A C G T T C G A C A T G A G T C C G T A C G T A A G T C
C T A G A C G T G A C T A C T G A G T C A G T C G C T A G C A T C T A G C T A G G T A C C T G A C T G A A G T C

Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:4
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:CTGCCCTVDCAAC-
TTGCCATGGCAACN
 A G T C A C G T A C T G A G T C A G T C G T A C A C G T T C G A C A T G A G T C C G T A C G T A A G T C A C G T
A G C T G A C T C A T G A G T C A G T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A A G T C T G A C

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:5
Score:0.63
Offset:3
Orientation:forward strand
Alignment:CTGCCCTVDCAAC--
---SCCTAGCAACAG
 A G T C A C G T A C T G A G T C A G T C G T A C A C G T T C G A C A T G A G T C C G T A C G T A A G T C A C G T A C G T
A C G T A C G T A C G T A T G C A G T C G T A C A G C T T C G A C T A G G A T C C T G A G T C A A G T C G C T A T C A G

X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:6
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:CTGCCCTVDCAAC-
TTGCCATGGCAACC
 A G T C A C G T A C T G A G T C A G T C G T A C A C G T T C G A C A T G A G T C C G T A C G T A A G T C A C G T
A G C T G A C T C A T G A G T C G A T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A G A T C G T A C

PB0054.1_Rfx3_1/Jaspar

Match Rank:7
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---CTGCCCTVDCAAC-------
TGTGACCCTTAGCAACCGATTAA
 A C G T A C G T A C G T A G T C A C G T A C T G A G T C A G T C G T A C A C G T T C G A C A T G A G T C C G T A C G T A A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T
G A C T C A T G A G C T A T C G G T C A G A T C T G A C A T G C G A C T A G C T T C G A C T A G G A T C C T G A C G T A A G T C T A G C T C A G C G T A G C A T G C A T G C T A G C T A

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:8
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:CTGCCCTVDCAAC
-TGACCTYA----
 A G T C A C G T A C T G A G T C A G T C G T A C A C G T T C G A C A T G A G T C C G T A C G T A A G T C
A C G T A G C T C T A G G C T A T G A C A T G C A G C T A G T C C G T A A C G T A C G T A C G T A C G T

RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer

Match Rank:9
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-CTGCCCTVDCAAC--
GTTGCCATGGCAACCG
 A C G T A G T C A C G T A C T G A G T C A G T C G T A C A C G T T C G A C A T G A G T C C G T A C G T A A G T C A C G T A C G T
C T A G A G C T G A C T C T A G A G T C A G T C G T C A C G A T T C A G T C A G G A T C C T G A T C G A G A T C T A G C T C A G

Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer

Match Rank:10
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-CTGCCCTVDCAAC-
GTTGCCATGGCAACM
 A C G T A G T C A C G T A C T G A G T C A G T C G T A C A C G T T C G A C A T G A G T C C G T A C G T A A G T C A C G T
C T A G A G C T G A C T C A T G A G T C A G T C G T C A C A G T C T A G T C A G G T A C C T G A T C G A G A T C T G A C