Information for 12-CATGGATCACTAG (Motif 20)

A T G C C G T A A C G T A C T G A T C G C G T A A G C T G T A C C G T A A G T C G C A T C G T A A C T G
Reverse Opposite:
G T A C G A C T C G T A A C T G G A C T A C T G C T G A G A C T A T G C A G T C C G T A A C G T A T C G
p-value:1e-6
log p-value:-1.385e+01
Information Content per bp:1.742
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif1.47%
Number of Background Sequences with motif22.6
Percentage of Background Sequences with motif0.05%
Average Position of motif in Targets47.8 +/- 34.4bp
Average Position of motif in Background61.9 +/- 18.8bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.60
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

JUND/MA0491.1/Jaspar

Match Rank:1
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:CATGGATCACTAG
NATGAGTCACN--
 A T G C C G T A A C G T A C T G A T C G C G T A A G C T G T A C C G T A A G T C G C A T C G T A A C T G
A T C G T C G A A C G T A C T G C G T A T A C G A C G T A G T C C G T A A G T C G A T C A C G T A C G T

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:2
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--CATGGATCACTAG
GTCATGCHTGRCTGS
 A C G T A C G T A T G C C G T A A C G T A C T G A T C G C G T A A G C T G T A C C G T A A G T C G C A T C G T A A C T G
A C T G A G C T A G T C G T C A A G C T T C A G A T G C G A T C G C A T A T C G T C G A T A G C C G A T C A T G T A G C

FOSL1/MA0477.1/Jaspar

Match Rank:3
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:CATGGATCACTAG
NATGAGTCACC--
 A T G C C G T A A C G T A C T G A T C G C G T A A G C T G T A C C G T A A G T C G C A T C G T A A C T G
A T G C T G C A A C G T A C T G C G T A A T C G A C G T A G T C C G T A A G T C G A T C A C G T A C G T

FOS/MA0476.1/Jaspar

Match Rank:4
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:CATGGATCACTAG
NATGAGTCANN--
 A T G C C G T A A C G T A C T G A T C G C G T A A G C T G T A C C G T A A G T C G C A T C G T A A C T G
T C G A T C G A A C G T A C T G C G T A T A C G A C G T G T A C C G T A A T G C G T C A A C G T A C G T

PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer

Match Rank:5
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---CATGGATCACTAG
NGTCACGCTTGGCTGC
 A C G T A C G T A C G T A T G C C G T A A C G T A C T G A T C G C G T A A G C T G T A C C G T A A G T C G C A T C G T A A C T G
C T A G A C T G A G C T A G T C G T C A G A T C T C A G A T G C G C A T G A C T A T C G T C A G T A G C G A C T C T A G T G A C

ZNF16(Zf)/HEK293-ZNF16.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:6
Score:0.54
Offset:-7
Orientation:forward strand
Alignment:-------CATGGATCACTAG-----
MACCTTCYATGGCTCCCTAKTGCCY
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T G C C G T A A C G T A C T G A T C G C G T A A G C T G T A C C G T A A G T C G C A T C G T A A C T G A C G T A C G T A C G T A C G T A C G T
T G C A T G C A A G T C A G T C G A C T C A G T A T G C G A T C C T G A A C G T C T A G C T A G A G T C A C G T A G T C A G T C A G T C G A C T C G T A A C G T A G C T C T A G G A T C G A T C G A T C

Cux2(Homeobox)/Liver-Cux2-ChIP-Seq(GSE35985)/Homer

Match Rank:7
Score:0.53
Offset:1
Orientation:reverse strand
Alignment:CATGGATCACTAG
-ATTGATTYND--
 A T G C C G T A A C G T A C T G A T C G C G T A A G C T G T A C C G T A A G T C G C A T C G T A A C T G
A C G T C G T A A C G T A G C T A T C G G T C A A G C T G A C T A G C T T G A C C G A T A C G T A C G T

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer

Match Rank:8
Score:0.53
Offset:-2
Orientation:reverse strand
Alignment:--CATGGATCACTAG
ATGATKGATGRC---
 A C G T A C G T A T G C C G T A A C G T A C T G A T C G C G T A A G C T G T A C C G T A A G T C G C A T C G T A A C T G
C T G A C G A T A T C G C G T A C G A T C A G T C T A G C G T A C G A T A C T G C T G A A T G C A C G T A C G T A C G T

PB0142.1_Jundm2_2/Jaspar

Match Rank:9
Score:0.53
Offset:-3
Orientation:forward strand
Alignment:---CATGGATCACTAG
ATTGATGAGTCACCAA
 A C G T A C G T A C G T A T G C C G T A A C G T A C T G A T C G C G T A A G C T G T A C C G T A A G T C G C A T C G T A A C T G
T G C A C A G T A C G T C T A G T C G A A G C T A C T G G T C A A T C G G A C T T G A C C T G A A G T C G T A C C T G A G T C A

CUX1/MA0754.1/Jaspar

Match Rank:10
Score:0.52
Offset:-1
Orientation:reverse strand
Alignment:-CATGGATCACTAG
NTATCGATTA----
 A C G T A T G C C G T A A C G T A C T G A T C G C G T A A G C T G T A C C G T A A G T C G C A T C G T A A C T G
C A G T A C G T C G T A G C A T A G T C T C A G T C G A G A C T G A C T C T G A A C G T A C G T A C G T A C G T