Information for 9-TCATWRMTTTKCA (Motif 7)

A C G T A G T C C G T A A C G T C G T A C T A G G T C A A C G T A C G T A C G T A C G T A G T C G T C A
Reverse Opposite:
A C G T A C T G G T C A C G T A C G T A C G T A A C G T A G T C C G A T T C G A A C G T A C T G C G T A
p-value:1e-9
log p-value:-2.154e+01
Information Content per bp:1.871
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.74%
Number of Background Sequences with motif5.8
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets51.3 +/- 23.3bp
Average Position of motif in Background47.0 +/- 24.4bp
Strand Bias (log2 ratio + to - strand density)2.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:1
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-TCATWRMTTTKCA-
CTCATGAATATTCAT
 A C G T A C G T A G T C C G T A A C G T C G T A C T A G G T C A A C G T A C G T A C G T A C G T A G T C G T C A A C G T
T A G C G A C T G A T C C G T A A C G T T C A G G T C A C G T A A C G T C G T A C G A T A C G T A G T C C G T A C G A T

POU2F2/MA0507.1/Jaspar

Match Rank:2
Score:0.63
Offset:3
Orientation:forward strand
Alignment:TCATWRMTTTKCA---
---TTCATTTGCATAT
 A C G T A G T C C G T A A C G T C G T A C T A G G T C A A C G T A C G T A C G T A C G T A G T C G T C A A C G T A C G T A C G T
A C G T A C G T A C G T G A C T C A G T G T A C G C T A A C G T G C A T A C G T C T A G A G T C G T C A A G C T C T G A G C A T

Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:3
Score:0.60
Offset:6
Orientation:forward strand
Alignment:TCATWRMTTTKCA---
------ATTTGCATAA
 A C G T A G T C C G T A A C G T C G T A C T A G G T C A A C G T A C G T A C G T A C G T A G T C G T C A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C G T A G C T C G A T C T A G G T A C C G T A A G C T C G T A G C T A

ONECUT3/MA0757.1/Jaspar

Match Rank:4
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-TCATWRMTTTKCA
NTTATTGATTTTTT
 A C G T A C G T A G T C C G T A A C G T C G T A C T A G G T C A A C G T A C G T A C G T A C G T A G T C G T C A
C G T A C G A T G C A T G C T A G C A T A G C T C A T G C T G A G A C T G A C T C G A T G C A T G A C T A G C T

PH0118.1_Nkx6-1_1/Jaspar

Match Rank:5
Score:0.60
Offset:-5
Orientation:reverse strand
Alignment:-----TCATWRMTTTKCA
CNNAGTAATTAATTNNC-
 A C G T A C G T A C G T A C G T A C G T A C G T A G T C C G T A A C G T C G T A C T A G G T C A A C G T A C G T A C G T A C G T A G T C G T C A
T A G C T C A G T C G A C T G A C A T G G A C T G T C A C G T A C G A T C G A T C T G A G C T A C G A T G C A T C G A T A C G T G A T C A C G T

Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer

Match Rank:6
Score:0.60
Offset:3
Orientation:reverse strand
Alignment:TCATWRMTTTKCA--
---CTCATTTGCATW
 A C G T A G T C C G T A A C G T C G T A C T A G G T C A A C G T A C G T A C G T A C G T A G T C G T C A A C G T A C G T
A C G T A C G T A C G T A G T C G C A T T G A C G T C A A C G T A G C T C G A T T C A G T G A C G C T A G C A T C G T A

Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:7
Score:0.60
Offset:3
Orientation:reverse strand
Alignment:TCATWRMTTTKCA--
---BTVATTWGCATA
 A C G T A G T C C G T A A C G T C G T A C T A G G T C A A C G T A C G T A C G T A C G T A G T C G T C A A C G T A C G T
A C G T A C G T A C G T A G T C C A G T T G C A G T C A A C G T A G C T C G A T T C A G G T A C C G T A A C G T C T G A

Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer

Match Rank:8
Score:0.60
Offset:6
Orientation:reverse strand
Alignment:TCATWRMTTTKCA---
------ATTTGCATAT
 A C G T A G T C C G T A A C G T C G T A C T A G G T C A A C G T A C G T A C G T A C G T A G T C G T C A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T G C T A C G A T G A C T A C G T C T A G G A T C G T C A C G A T C G T A C A G T

PH0120.1_Nkx6-3/Jaspar

Match Rank:9
Score:0.59
Offset:-5
Orientation:reverse strand
Alignment:-----TCATWRMTTTKCA
CNNANTAATTAATTNNC-
 A C G T A C G T A C G T A C G T A C G T A C G T A G T C C G T A A C G T C G T A C T A G G T C A A C G T A C G T A C G T A C G T A G T C G T C A
T G A C T C G A T G C A T C G A A C T G G A C T T G C A C G T A G A C T G A C T C T G A G C T A C G A T C G A T C G A T A C G T G A T C A C G T

PH0073.1_Hoxc9/Jaspar

Match Rank:10
Score:0.59
Offset:-5
Orientation:forward strand
Alignment:-----TCATWRMTTTKCA
GGAGGTCATTAATTAT--
 A C G T A C G T A C G T A C G T A C G T A C G T A G T C C G T A A C G T C G T A C T A G G T C A A C G T A C G T A C G T A C G T A G T C G T C A
T C A G C A T G T C G A C T A G T C A G G A C T G T A C C T G A G C A T G C A T C G T A G C T A G A C T G A C T C G T A A C G T A C G T A C G T