Information for 6-AATTTAGATT (Motif 5)

C G T A G C T A G C A T A C G T A C G T C T G A T C A G C G T A A G C T A C G T
Reverse Opposite:
T G C A C T G A C G A T A G T C G A C T C G T A G T C A C G T A C A G T A C G T
p-value:1e-10
log p-value:-2.338e+01
Information Content per bp:1.835
Number of Target Sequences with motif16.0
Percentage of Target Sequences with motif1.97%
Number of Background Sequences with motif105.8
Percentage of Background Sequences with motif0.22%
Average Position of motif in Targets58.3 +/- 20.5bp
Average Position of motif in Background50.5 +/- 28.8bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

LIN54/MA0619.1/Jaspar

Match Rank:1
Score:0.64
Offset:1
Orientation:forward strand
Alignment:AATTTAGATT
-ATTTGAATT
 C G T A G C T A G C A T A C G T A C G T C T G A T C A G C G T A A G C T A C G T
A C G T C G T A A C G T A C G T A G C T C T A G C G T A C G T A G A C T G A C T

POU3F1/MA0786.1/Jaspar

Match Rank:2
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-AATTTAGATT-
TAATTTGCATAA
 A C G T C G T A G C T A G C A T A C G T A C G T C T G A T C A G C G T A A G C T A C G T A C G T
C G A T G T C A G C T A G C A T G C A T G C A T T C A G G T A C C T G A G A C T C G T A G C T A

Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer

Match Rank:3
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--AATTTAGATT
CTCATTTGCATW
 A C G T A C G T C G T A G C T A G C A T A C G T A C G T C T G A T C A G C G T A A G C T A C G T
A G T C G C A T T G A C G T C A A C G T A G C T C G A T T C A G T G A C G C T A G C A T C G T A

Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:4
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--AATTTAGATT
BTVATTWGCATA
 A C G T A C G T C G T A G C T A G C A T A C G T A C G T C T G A T C A G C G T A A G C T A C G T
A G T C C A G T T G C A G T C A A C G T A G C T C G A T T C A G G T A C C G T A A C G T C T G A

POU2F2/MA0507.1/Jaspar

Match Rank:5
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--AATTTAGATT-
TTCATTTGCATAT
 A C G T A C G T C G T A G C T A G C A T A C G T A C G T C T G A T C A G C G T A A G C T A C G T A C G T
G A C T C A G T G T A C G C T A A C G T G C A T A C G T C T A G A G T C G T C A A G C T C T G A G C A T

POU5F1B/MA0792.1/Jaspar

Match Rank:6
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:AATTTAGATT
-ATTTGCATA
 C G T A G C T A G C A T A C G T A C G T C T G A T C A G C G T A A G C T A C G T
A C G T G C T A G C A T G C A T G C A T T C A G G T A C T C G A G C A T C T G A

PB0037.1_Isgf3g_1/Jaspar

Match Rank:7
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--AATTTAGATT---
TNAGTTTCGATTTTN
 A C G T A C G T C G T A G C T A G C A T A C G T A C G T C T G A T C A G C G T A A G C T A C G T A C G T A C G T A C G T
C A G T G C A T C T G A A T C G C G A T G C A T A C G T A G T C C T A G C G T A C G A T G C A T G A C T G A C T A C T G

PB0171.1_Sox18_2/Jaspar

Match Rank:8
Score:0.60
Offset:-6
Orientation:reverse strand
Alignment:------AATTTAGATT
NNNNTGAATTCANNNC
 A C G T A C G T A C G T A C G T A C G T A C G T C G T A G C T A G C A T A C G T A C G T C T G A T C A G C G T A A G C T A C G T
A C T G C A T G G A T C G C T A A G C T C T A G G T C A C T G A G A C T C A G T G A T C T C G A T A C G A G C T T G A C G A T C

PHOX2A/MA0713.1/Jaspar

Match Rank:9
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:AATTTAGATT-
TAATTAAATTA
 C G T A G C T A G C A T A C G T A C G T C T G A T C A G C G T A A G C T A C G T A C G T
G C A T C G T A T C G A A G C T A G C T C T G A T C G A C T G A G A C T G A C T C G T A

POU2F1/MA0785.1/Jaspar

Match Rank:10
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:AATTTAGATT--
AATTTGCATANT
 C G T A G C T A G C A T A C G T A C G T C T G A T C A G C G T A A G C T A C G T A C G T A C G T
G T C A G C T A G C A T G A C T G C A T T C A G G T A C T C G A G C A T C T G A G C A T C G A T