Information for 5-GAACTTAGAA (Motif 6)

A C T G C G T A C G T A G T A C A C G T C G A T C G T A A C T G C T G A C T G A
Reverse Opposite:
A G C T G A C T A G T C A C G T C G T A C G T A A C T G A C G T C G A T A G T C
p-value:1e-11
log p-value:-2.692e+01
Information Content per bp:1.823
Number of Target Sequences with motif17.0
Percentage of Target Sequences with motif1.97%
Number of Background Sequences with motif89.3
Percentage of Background Sequences with motif0.19%
Average Position of motif in Targets45.8 +/- 25.3bp
Average Position of motif in Background48.8 +/- 28.7bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

ISL2/MA0914.1/Jaspar

Match Rank:1
Score:0.70
Offset:0
Orientation:forward strand
Alignment:GAACTTAGAA
GCACTTAA--
 A C T G C G T A C G T A G T A C A C G T C G A T C G T A A C T G C T G A C T G A
T A C G G A T C G C T A G T A C C G A T G A C T G C T A C T G A A C G T A C G T

PH0117.1_Nkx3-1/Jaspar

Match Rank:2
Score:0.67
Offset:-6
Orientation:forward strand
Alignment:------GAACTTAGAA-
TACTAAGTACTTAAATG
 A C G T A C G T A C G T A C G T A C G T A C G T A C T G C G T A C G T A G T A C A C G T C G A T C G T A A C T G C T G A C T G A A C G T
C G A T C G A T G A T C C G A T C T G A C T G A A T C G A G C T T C G A A T G C G A C T G A C T G C T A C T G A C G T A C G A T A T C G

VSX2/MA0726.1/Jaspar

Match Rank:3
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:GAACTTAGAA
NTAATTAG--
 A C T G C G T A C G T A G T A C A C G T C G A T C G T A A C T G C T G A C T G A
T G A C G A C T C G T A C T G A A C G T C G A T C T G A T C A G A C G T A C G T

Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer

Match Rank:4
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--GAACTTAGAA
AAGCACTTAA--
 A C G T A C G T A C T G C G T A C G T A G T A C A C G T C G A T C G T A A C T G C T G A C T G A
T C G A T C G A T A C G G A T C G T C A G T A C C G A T A G C T G T C A T G C A A C G T A C G T

Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer

Match Rank:5
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:GAACTTAGAA
BCMATTAG--
 A C T G C G T A C G T A G T A C A C G T C G A T C G T A A C T G C T G A C T G A
A C T G A G T C G T C A G T C A A C G T A G C T C G T A T C A G A C G T A C G T

PH0039.1_Mnx1/Jaspar

Match Rank:6
Score:0.65
Offset:-3
Orientation:forward strand
Alignment:---GAACTTAGAA---
GTACTAATTAGTGGCG
 A C G T A C G T A C G T A C T G C G T A C G T A G T A C A C G T C G A T C G T A A C T G C T G A C T G A A C G T A C G T A C G T
A C T G A C G T T G C A A T G C G A C T G T C A C G T A G A C T A C G T C T G A A T C G A C G T C T A G T A C G G A T C T A C G

VSX1/MA0725.1/Jaspar

Match Rank:7
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:GAACTTAGAA
NTAATTAG--
 A C T G C G T A C G T A G T A C A C G T C G A T C G T A A C T G C T G A C T G A
T G C A G A C T G T C A C T G A A G C T C A G T C T G A C T A G A C G T A C G T

Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer

Match Rank:8
Score:0.65
Offset:1
Orientation:forward strand
Alignment:GAACTTAGAA
-TAATTAGN-
 A C T G C G T A C G T A G T A C A C G T C G A T C G T A A C T G C T G A C T G A
A C G T A G C T G T C A C G T A A C G T A C G T C T G A T C A G A T G C A C G T

PH0112.1_Nkx2-3/Jaspar

Match Rank:9
Score:0.65
Offset:-6
Orientation:reverse strand
Alignment:------GAACTTAGAA
CNTTAAGTACTTAANG
 A C G T A C G T A C G T A C G T A C G T A C G T A C T G C G T A C G T A G T A C A C G T C G A T C G T A A C T G C T G A C T G A
G A T C C G T A G A C T A G C T C T G A C T G A A T C G A G C T C T G A A T G C G A C T G A C T C G T A T C G A T C G A C T A G

VAX2/MA0723.1/Jaspar

Match Rank:10
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:GAACTTAGAA
NTAATTAG--
 A C T G C G T A C G T A G T A C A C G T C G A T C G T A A C T G C T G A C T G A
T C A G G A C T G T C A G C T A C G A T C A G T C T G A T C A G A C G T A C G T