Information for 8-GCATCTCAGA (Motif 13)

A C T G A T G C T C G A C A G T A G T C A C G T A G T C C G T A A C T G C T G A
Reverse Opposite:
A G C T A G T C A C G T T A C G C G T A C T A G G T C A A G C T A T C G A G T C
p-value:1e-10
log p-value:-2.367e+01
Information Content per bp:1.842
Number of Target Sequences with motif17.0
Percentage of Target Sequences with motif1.97%
Number of Background Sequences with motif110.9
Percentage of Background Sequences with motif0.23%
Average Position of motif in Targets59.5 +/- 27.7bp
Average Position of motif in Background53.7 +/- 26.7bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer

Match Rank:1
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:GCATCTCAGA---
-TTTCTNAGAAAN
 A C T G A T G C T C G A C A G T A G T C A C G T A G T C C G T A A C T G C T G A A C G T A C G T A C G T
A C G T A G C T A C G T A C G T A G T C G A C T G C T A C T G A A C T G C G T A C G T A T G C A G A C T

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:2
Score:0.53
Offset:2
Orientation:reverse strand
Alignment:GCATCTCAGA--
--ATGCCAGACN
 A C T G A T G C T C G A C A G T A G T C A C G T A G T C C G T A A C T G C T G A A C G T A C G T
A C G T A C G T C G T A G C A T C A T G T A G C A G T C C G T A C T A G C G T A G A T C T A G C

NHLH1/MA0048.2/Jaspar

Match Rank:3
Score:0.52
Offset:-1
Orientation:reverse strand
Alignment:-GCATCTCAGA
CGCAGCTGCG-
 A C G T A C T G A T G C T C G A C A G T A G T C A C G T A G T C C G T A A C T G C T G A
T G A C C T A G A T G C T C G A A T C G T A G C A C G T A C T G A G T C A C T G A C G T

Nkx2-5(var.2)/MA0503.1/Jaspar

Match Rank:4
Score:0.52
Offset:-1
Orientation:forward strand
Alignment:-GCATCTCAGA
AGCCACTCAAG
 A C G T A C T G A T G C T C G A C A G T A G T C A C G T A G T C C G T A A C T G C T G A
C T G A C T A G T A G C A G T C G C T A A G T C A C G T A G T C G T C A C T G A T A C G

PB0098.1_Zfp410_1/Jaspar

Match Rank:5
Score:0.51
Offset:-4
Orientation:reverse strand
Alignment:----GCATCTCAGA---
NNNTCCATCCCATAANN
 A C G T A C G T A C G T A C G T A C T G A T G C T C G A C A G T A G T C A C G T A G T C C G T A A C T G C T G A A C G T A C G T A C G T
A C G T G C A T G T C A A C G T T G A C G A T C G C T A A G C T G A T C G A T C G A T C C G T A C A G T G C T A G T C A A G C T G C T A

PB0138.1_Irf4_2/Jaspar

Match Rank:6
Score:0.51
Offset:0
Orientation:reverse strand
Alignment:GCATCTCAGA-----
GNNACCGAGAATNNN
 A C T G A T G C T C G A C A G T A G T C A C G T A G T C C G T A A C T G C T G A A C G T A C G T A C G T A C G T A C G T
A T C G G T A C C T G A G C T A A G T C A G T C C A T G T C G A C A T G G C T A C T G A C G A T T C G A A T G C A G C T

POL002.1_INR/Jaspar

Match Rank:7
Score:0.50
Offset:5
Orientation:forward strand
Alignment:GCATCTCAGA---
-----TCAGTCTT
 A C T G A T G C T C G A C A G T A G T C A C G T A G T C C G T A A C T G C T G A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C A G T A G T C C G T A A T C G G A C T G A T C A G C T A G C T

Pou5f1::Sox2/MA0142.1/Jaspar

Match Rank:8
Score:0.50
Offset:-4
Orientation:reverse strand
Alignment:----GCATCTCAGA-
ATTTGCATAACAAAG
 A C G T A C G T A C G T A C G T A C T G A T G C T C G A C A G T A G T C A C G T A G T C C G T A A C T G C T G A A C G T
G T C A G A C T G A C T G C A T T C A G T G A C G C T A C G A T C T G A G C T A A T G C G T C A T C G A C G T A T C A G

Stat5a::Stat5b/MA0519.1/Jaspar

Match Rank:9
Score:0.50
Offset:0
Orientation:forward strand
Alignment:GCATCTCAGA-
ATTTCCAAGAA
 A C T G A T G C T C G A C A G T A G T C A C G T A G T C C G T A A C T G C T G A A C G T
C T G A A G C T A C G T A G C T A G T C G A T C G T C A C T G A A C T G G C T A C T G A

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:10
Score:0.50
Offset:5
Orientation:reverse strand
Alignment:GCATCTCAGA-----
-----CCAGACRSVB
 A C T G A T G C T C G A C A G T A G T C A C G T A G T C C G T A A C T G C T G A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C