Information for 8-GAGGCGCTCGGAG (Motif 13)

A C T G G T C A C T A G A C T G A G T C C A T G A G T C A C G T T A G C A T C G A C T G C G T A A T C G
Reverse Opposite:
A T G C G A C T A G T C A T G C A C T G G T C A A C T G G T A C A C T G A G T C A G T C A C G T A G T C
p-value:1e-9
log p-value:-2.197e+01
Information Content per bp:1.801
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif0.95%
Number of Background Sequences with motif14.5
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets51.6 +/- 17.5bp
Average Position of motif in Background56.0 +/- 25.6bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PLAG1/MA0163.1/Jaspar

Match Rank:1
Score:0.61
Offset:0
Orientation:forward strand
Alignment:GAGGCGCTCGGAG-
GGGGCCCAAGGGGG
 A C T G G T C A C T A G A C T G A G T C C A T G A G T C A C G T T A G C A T C G A C T G C G T A A T C G A C G T
A C T G C T A G A C T G A C T G A T G C A G T C G T A C C G T A T G C A C A T G A C T G A C T G A C T G C T A G

POL006.1_BREu/Jaspar

Match Rank:2
Score:0.55
Offset:2
Orientation:reverse strand
Alignment:GAGGCGCTCGGAG
--GGCGCGCT---
 A C T G G T C A C T A G A C T G A G T C C A T G A G T C A C G T T A G C A T C G A C T G C G T A A T C G
A C G T A C G T C T A G T A C G A G T C A C T G A G T C A T C G A T G C A C G T A C G T A C G T A C G T

PB0008.1_E2F2_1/Jaspar

Match Rank:3
Score:0.51
Offset:-3
Orientation:forward strand
Alignment:---GAGGCGCTCGGAG
ATAAAGGCGCGCGAT-
 A C G T A C G T A C G T A C T G G T C A C T A G A C T G A G T C C A T G A G T C A C G T T A G C A T C G A C T G C G T A A T C G
C T G A G C A T C G T A G C T A C T G A T A C G A T C G T G A C A T C G A T G C A T C G G A T C T A C G G C T A G C A T A C G T

POL008.1_DCE_S_I/Jaspar

Match Rank:4
Score:0.51
Offset:-1
Orientation:reverse strand
Alignment:-GAGGCGCTCGGAG
NGAAGC--------
 A C G T A C T G G T C A C T A G A C T G A G T C C A T G A G T C A C G T T A G C A T C G A C T G C G T A A T C G
T A C G T A C G T G C A T C G A T A C G T G A C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0052.1_Plagl1_1/Jaspar

Match Rank:5
Score:0.50
Offset:-3
Orientation:forward strand
Alignment:---GAGGCGCTCGGAG
TTGGGGGCGCCCCTAG
 A C G T A C G T A C G T A C T G G T C A C T A G A C T G A G T C C A T G A G T C A C G T T A G C A T C G A C T G C G T A A T C G
A C G T G A C T C T A G C T A G C A T G C T A G A C T G A T G C A T C G T G A C G A T C G T A C G A T C A C G T T C G A T A C G

PB0009.1_E2F3_1/Jaspar

Match Rank:6
Score:0.50
Offset:-3
Orientation:forward strand
Alignment:---GAGGCGCTCGGAG
ATAAGGGCGCGCGAT-
 A C G T A C G T A C G T A C T G G T C A C T A G A C T G A G T C C A T G A G T C A C G T T A G C A T C G A C T G C G T A A T C G
T C G A G C A T C G T A G C T A C T A G T A C G T A C G T A G C A T C G A T G C A T C G G A T C A T C G G C T A G C A T A C G T

POL013.1_MED-1/Jaspar

Match Rank:7
Score:0.50
Offset:8
Orientation:reverse strand
Alignment:GAGGCGCTCGGAG-
--------CGGAGC
 A C T G G T C A C T A G A C T G A G T C C A T G A G T C A C G T T A G C A T C G A C T G C G T A A T C G A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T G C A C T G A C T G C G T A A C T G A G T C

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:8
Score:0.49
Offset:1
Orientation:forward strand
Alignment:GAGGCGCTCGGAG
-AASCACTCAA--
 A C T G G T C A C T A G A C T G A G T C C A T G A G T C A C G T T A G C A T C G A C T G C G T A A T C G
A C G T C T G A C T G A T A G C G A T C G C T A G T A C A C G T G A T C T G C A C G T A A C G T A C G T

Nkx2-5(var.2)/MA0503.1/Jaspar

Match Rank:9
Score:0.48
Offset:1
Orientation:forward strand
Alignment:GAGGCGCTCGGAG
-AGCCACTCAAG-
 A C T G G T C A C T A G A C T G A G T C C A T G A G T C A C G T T A G C A T C G A C T G C G T A A T C G
A C G T C T G A C T A G T A G C A G T C G C T A A G T C A C G T A G T C G T C A C T G A T A C G A C G T

ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:10
Score:0.48
Offset:2
Orientation:reverse strand
Alignment:GAGGCGCTCGGAG-
--GGCTCYAKCAYC
 A C T G G T C A C T A G A C T G A G T C C A T G A G T C A C G T T A G C A T C G A C T G C G T A A T C G A C G T
A C G T A C G T C A T G A C T G A G T C A C G T A G T C G A T C C G T A A C T G T A G C C T G A A G C T T A G C