Information for 6-AGGGTMATGCTRA (Motif 11)

C G T A C A T G C T A G T A C G G A C T T G A C G T C A C A G T C A T G G T A C C G A T C T G A C G T A
Reverse Opposite:
G A C T A G C T G C T A C A T G G T A C G T C A C A G T A C T G C T G A A T G C G A T C G T A C G C A T
p-value:1e-11
log p-value:-2.688e+01
Information Content per bp:1.537
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif1.06%
Number of Background Sequences with motif1.7
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets51.6 +/- 20.7bp
Average Position of motif in Background79.6 +/- 2.7bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:1
Score:0.66
Offset:5
Orientation:forward strand
Alignment:AGGGTMATGCTRA----
-----TATGCWAATBAV
 C G T A C A T G C T A G T A C G G A C T T G A C G T C A C A G T C A T G G T A C C G A T C T G A C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T G A C T C G T A A C G T A C T G A G T C C G T A C T G A C G T A C A G T A C G T G T C A T C A G

Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer

Match Rank:2
Score:0.63
Offset:5
Orientation:forward strand
Alignment:AGGGTMATGCTRA----
-----WATGCAAATGAG
 C G T A C A T G C T A G T A C G G A C T T G A C G T C A C A G T C A T G G T A C C G A T C T G A C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T G C A T C G T A C G A T A C T G A G T C G C T A C T G A C G T A C A G T A C T G C G T A T C A G

Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:3
Score:0.61
Offset:4
Orientation:reverse strand
Alignment:AGGGTMATGCTRA-
----TTATGCAAAT
 C G T A C A T G C T A G T A C G G A C T T G A C G T C A C A G T C A T G G T A C C G A T C T G A C G T A A C G T
A C G T A C G T A C G T A C G T C G A T G C A T C T G A A C G T A C T G A G T C C G T A C T G A C G T A C G A T

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:4
Score:0.61
Offset:5
Orientation:forward strand
Alignment:AGGGTMATGCTRA--
-----CCTGCTGAGH
 C G T A C A T G C T A G T A C G G A C T T G A C G T C A C A G T C A T G G T A C C G A T C T G A C G T A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A G T C G T A C A G C T C T A G A G T C C G A T A C T G C G T A A C T G G T C A

Pou5f1::Sox2/MA0142.1/Jaspar

Match Rank:5
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-AGGGTMATGCTRA-
CTTTGTTATGCAAAT
 A C G T C G T A C A T G C T A G T A C G G A C T T G A C G T C A C A G T C A T G G T A C C G A T C T G A C G T A A C G T
A G T C G C A T A G C T C A G T T A C G C G A T G A C T G C T A C G A T A C T G A G T C C G T A C T G A C T G A C A G T

MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer

Match Rank:6
Score:0.60
Offset:7
Orientation:forward strand
Alignment:AGGGTMATGCTRA----
-------TGCTGACTCA
 C G T A C A T G C T A G T A C G G A C T T G A C G T C A C A G T C A T G G T A C C G A T C T G A C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T G A C T C T A G G A T C C A G T A C T G C T G A A T G C G C A T A T G C C T G A

NRL/MA0842.1/Jaspar

Match Rank:7
Score:0.60
Offset:3
Orientation:forward strand
Alignment:AGGGTMATGCTRA-
---AATTTGCTGAC
 C G T A C A T G C T A G T A C G G A C T T G A C G T C A C A G T C A T G G T A C C G A T C T G A C G T A A C G T
A C G T A C G T A C G T C G T A C G T A G C A T G C A T G A C T T C A G G T A C G C A T C A T G G C T A A G T C

POU5F1B/MA0792.1/Jaspar

Match Rank:8
Score:0.60
Offset:5
Orientation:forward strand
Alignment:AGGGTMATGCTRA-
-----TATGCAAAT
 C G T A C A T G C T A G T A C G G A C T T G A C G T C A C A G T C A T G G T A C C G A T C T G A C G T A A C G T
A C G T A C G T A C G T A C G T A C G T G A C T C G T A A G C T C A T G A G T C C G T A C G T A C G T A C G A T

POU3F1/MA0786.1/Jaspar

Match Rank:9
Score:0.59
Offset:4
Orientation:forward strand
Alignment:AGGGTMATGCTRA---
----TTATGCAAATTA
 C G T A C A T G C T A G T A C G G A C T T G A C G T C A C A G T C A T G G T A C C G A T C T G A C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C G A T G C A T C T G A G A C T C A T G A G T C C G T A C G T A C G T A C G A T C A G T G C T A

POU3F4/MA0789.1/Jaspar

Match Rank:10
Score:0.58
Offset:5
Orientation:forward strand
Alignment:AGGGTMATGCTRA-
-----TATGCAAAT
 C G T A C A T G C T A G T A C G G A C T T G A C G T C A C A G T C A T G G T A C C G A T C T G A C G T A A C G T
A C G T A C G T A C G T A C G T A C G T G C A T C T G A G A C T C A T G A G T C C G T A G C T A C G T A C G A T