Information for 1-HGCTGCAGAGAAT (Motif 1)

G T A C A T C G A T G C A C G T A C T G A T G C C G T A C T A G C T G A C A T G C T G A C G T A G C A T
Reverse Opposite:
C G T A C G A T G A C T G T A C A G C T A G T C C G A T A T C G G T A C C G T A A T C G T A G C C A T G
p-value:1e-15
log p-value:-3.672e+01
Information Content per bp:1.673
Number of Target Sequences with motif37.0
Percentage of Target Sequences with motif5.24%
Number of Background Sequences with motif457.7
Percentage of Background Sequences with motif0.93%
Average Position of motif in Targets39.8 +/- 21.5bp
Average Position of motif in Background53.0 +/- 28.3bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:1
Score:0.66
Offset:-2
Orientation:reverse strand
Alignment:--HGCTGCAGAGAAT
CCCCCTGCTGTG---
 A C G T A C G T G T A C A T C G A T G C A C G T A C T G A T G C C G T A C T A G C T G A C A T G C T G A C G T A G C A T
G A T C G A T C G A T C G T A C G T A C G C A T C T A G A G T C G C A T A C T G C G A T A C T G A C G T A C G T A C G T

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:2
Score:0.63
Offset:1
Orientation:forward strand
Alignment:HGCTGCAGAGAAT
-CCTGCTGAGH--
 G T A C A T C G A T G C A C G T A C T G A T G C C G T A C T A G C T G A C A T G C T G A C G T A G C A T
A C G T A G T C G T A C A G C T C T A G A G T C C G A T A C T G C G T A A C T G G T C A A C G T A C G T

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:3
Score:0.63
Offset:-4
Orientation:forward strand
Alignment:----HGCTGCAGAGAAT
GGCCYCCTGCTGDGH--
 A C G T A C G T A C G T A C G T G T A C A T C G A T G C A C G T A C T G A T G C C G T A C T A G C T G A C A T G C T G A C G T A G C A T
C A T G T A C G T A G C G A T C G A T C A T G C G T A C G A C T T C A G A T G C C G A T A T C G C A G T A C T G G T A C A C G T A C G T

Gfi1b/MA0483.1/Jaspar

Match Rank:4
Score:0.61
Offset:3
Orientation:reverse strand
Alignment:HGCTGCAGAGAAT-
---TGCTGTGATTT
 G T A C A T C G A T G C A C G T A C T G A T G C C G T A C T A G C T G A C A T G C T G A C G T A G C A T A C G T
A C G T A C G T A C G T C G A T C T A G G A T C G C A T A T C G C G A T A C T G T C G A A G C T A C G T A C G T

STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer

Match Rank:5
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:HGCTGCAGAGAAT-
--TTTCTNAGAAAN
 G T A C A T C G A T G C A C G T A C T G A T G C C G T A C T A G C T G A C A T G C T G A C G T A G C A T A C G T
A C G T A C G T A G C T A C G T A C G T A G T C G A C T G C T A C T G A A C T G C G T A C G T A T G C A G A C T

Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer

Match Rank:6
Score:0.60
Offset:4
Orientation:reverse strand
Alignment:HGCTGCAGAGAAT-
----GCAGTGATTT
 G T A C A T C G A T G C A C G T A C T G A T G C C G T A C T A G C T G A C A T G C T G A C G T A G C A T A C G T
A C G T A C G T A C G T A C G T C T A G A G T C G C T A A T C G C G A T A C T G T C G A A C G T A C G T A C G T

STAT3/MA0144.2/Jaspar

Match Rank:7
Score:0.60
Offset:2
Orientation:forward strand
Alignment:HGCTGCAGAGAAT
--CTTCTGGGAAA
 G T A C A T C G A T G C A C G T A C T G A T G C C G T A C T A G C T G A C A T G C T G A C G T A G C A T
A C G T A C G T A G T C C G A T A C G T G A T C G A C T C A T G C T A G C T A G C G T A C G T A C T G A

PB0205.1_Zic1_2/Jaspar

Match Rank:8
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--HGCTGCAGAGAAT
TNTCCTGCTGTGNNG
 A C G T A C G T G T A C A T C G A T G C A C G T A C T G A T G C C G T A C T A G C T G A C A T G C T G A C G T A G C A T
G C A T A G T C C A G T T G A C G T A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G C A T C A T G T C A G

PB0206.1_Zic2_2/Jaspar

Match Rank:9
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--HGCTGCAGAGAAT
TCNCCTGCTGNGNNN
 A C G T A C G T G T A C A T C G A T G C A C G T A C T G A T G C C G T A C T A G C T G A C A T G C T G A C G T A G C A T
G C A T A G T C A C G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G A C T C A T G C T A G

Stat4/MA0518.1/Jaspar

Match Rank:10
Score:0.58
Offset:2
Orientation:forward strand
Alignment:HGCTGCAGAGAAT---
--TTTCCAGGAAATGG
 G T A C A T C G A T G C A C G T A C T G A T G C C G T A C T A G C T G A C A T G C T G A C G T A G C A T A C G T A C G T A C G T
A C G T A C G T A G C T G C A T C A G T T G A C G A T C C T G A C T A G C T A G C G T A C G T A T C G A A G C T T A C G T C A G