Information for 5-GGCAGCCTTTCAC (Motif 7)

A C T G A C T G A G T C G C T A A C T G A G T C A G T C A C G T A C G T A C G T A G T C C G T A A G T C
Reverse Opposite:
A C T G A C G T A C T G C G T A G T C A C G T A A C T G A C T G A G T C C A G T A C T G A G T C A G T C
p-value:1e-10
log p-value:-2.481e+01
Information Content per bp:1.928
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.58%
Number of Background Sequences with motif0.4
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets46.0 +/- 9.5bp
Average Position of motif in Background60.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:1
Score:0.62
Offset:2
Orientation:forward strand
Alignment:GGCAGCCTTTCAC--
--CTGTCTGTCACCT
 A C T G A C T G A G T C G C T A A C T G A G T C A G T C A C G T A C G T A C G T A G T C C G T A A G T C A C G T A C G T
A C G T A C G T T A G C G C A T T C A G A C G T A G T C A C G T T A C G C A G T A T G C G C T A T A G C G A T C G A C T

Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:2
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--GGCAGCCTTTCAC
CTGGCAGNCTGCCA-
 A C G T A C G T A C T G A C T G A G T C G C T A A C T G A G T C A G T C A C G T A C G T A C G T A G T C C G T A A G T C
A G T C C G A T A C T G A T C G T G A C G C T A C A T G A T C G T G A C C G A T A C T G T A G C G T A C G T C A A C G T

PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer

Match Rank:3
Score:0.61
Offset:5
Orientation:forward strand
Alignment:GGCAGCCTTTCAC----
-----ACTTTCACTTTC
 A C T G A C T G A G T C G C T A A C T G A G T C A G T C A C G T A C G T A C G T A G T C C G T A A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T C G A T G A C G C A T A G C T C A G T G A T C G C T A G A T C G A C T A C G T G C A T A G T C

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:4
Score:0.60
Offset:3
Orientation:reverse strand
Alignment:GGCAGCCTTTCAC--
---TGTCTGDCACCT
 A C T G A C T G A G T C G C T A A C T G A G T C A G T C A C G T A C G T A C G T A G T C C G T A A G T C A C G T A C G T
A C G T A C G T A C G T G C A T A C T G C G A T A G T C A C G T T A C G C A T G A G T C C G T A T A G C G A T C G A C T

PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer

Match Rank:5
Score:0.59
Offset:4
Orientation:forward strand
Alignment:GGCAGCCTTTCAC---
----GSCTGTCACTCA
 A C T G A C T G A G T C G C T A A C T G A G T C A G T C A C G T A C G T A C G T A G T C C G T A A G T C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C T A G A T G C A T G C C G A T A C T G G A C T A T G C G C T A T G A C A G C T T A G C G C T A

MEIS2/MA0774.1/Jaspar

Match Rank:6
Score:0.58
Offset:5
Orientation:reverse strand
Alignment:GGCAGCCTTTCAC
-----GCTGTCAA
 A C T G A C T G A G T C G C T A A C T G A G T C A G T C A C G T A C G T A C G T A G T C C G T A A G T C
A C G T A C G T A C G T A C G T A C G T A T C G A T G C A C G T C A T G G C A T A G T C G T C A G C T A

MEIS3/MA0775.1/Jaspar

Match Rank:7
Score:0.58
Offset:5
Orientation:reverse strand
Alignment:GGCAGCCTTTCAC
-----CCTGTCAA
 A C T G A C T G A G T C G C T A A C T G A G T C A G T C A C G T A C G T A C G T A G T C C G T A A G T C
A C G T A C G T A C G T A C G T A C G T T A G C T G A C G A C T C T A G G A C T A T G C C G T A G C T A

PRDM1/MA0508.1/Jaspar

Match Rank:8
Score:0.56
Offset:3
Orientation:reverse strand
Alignment:GGCAGCCTTTCAC-----
---TCACTTTCACTTTCN
 A C T G A C T G A G T C G C T A A C T G A G T C A G T C A C G T A C G T A C G T A G T C C G T A A G T C A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T G A C T G A T C T G C A A G T C G C A T G A C T A C G T A G T C G T C A G A T C A G C T A G C T G A C T G A T C G C A T

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:9
Score:0.55
Offset:1
Orientation:forward strand
Alignment:GGCAGCCTTTCAC
-SCTGTCAVTCAV
 A C T G A C T G A G T C G C T A A C T G A G T C A G T C A C G T A C G T A C G T A G T C C G T A A G T C
A C G T T A C G A T G C G A C T A C T G A G C T A G T C G T C A T G C A A C G T A G T C G C T A T G C A

Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer

Match Rank:10
Score:0.55
Offset:4
Orientation:forward strand
Alignment:GGCAGCCTTTCAC-
----VGCTGWCAVB
 A C T G A C T G A G T C G C T A A C T G A G T C A G T C A C G T A C G T A C G T A G T C C G T A A G T C A C G T
A C G T A C G T A C G T A C G T T C A G T A C G T A G C A C G T A C T G C G A T A G T C C G T A T A C G A G T C