Information for 16-AGGGCACTAA (Motif 28)

C G T A A C T G A C T G A C T G A G T C C G T A A G T C A C G T C G T A C G T A
Reverse Opposite:
C G A T A C G T C G T A A C T G A C G T A C T G A G T C A G T C A G T C A C G T
p-value:1e-3
log p-value:-8.502e+00
Information Content per bp:1.962
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif0.35%
Number of Background Sequences with motif7.0
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets46.2 +/- 31.3bp
Average Position of motif in Background39.7 +/- 21.0bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.67
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

ZNF264(Zf)/HEK293-ZNF264.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:1
Score:0.82
Offset:0
Orientation:forward strand
Alignment:AGGGCACTAA--
RGGGCACTAACY
 C G T A A C T G A C T G A C T G A G T C C G T A A G T C A C G T C G T A C G T A A C G T A C G T
T C G A C A T G C A T G T A C G G T A C T C G A A G T C C A G T C T G A C G T A A G T C G A C T

PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer

Match Rank:2
Score:0.73
Offset:0
Orientation:forward strand
Alignment:AGGGCACTAA--
AGGTCTCTAACC
 C G T A A C T G A C T G A C T G A G T C C G T A A G T C A C G T C G T A C G T A A C G T A C G T
C T G A T C A G A C T G C A G T A G T C G A C T A G T C A C G T C G T A G C T A A T G C G A T C

PB0133.1_Hic1_2/Jaspar

Match Rank:3
Score:0.69
Offset:-5
Orientation:reverse strand
Alignment:-----AGGGCACTAA-
NNNNTTGGGCACNNCN
 A C G T A C G T A C G T A C G T A C G T C G T A A C T G A C T G A C T G A G T C C G T A A G T C A C G T C G T A C G T A A C G T
A G T C G A T C C A G T G C A T G C A T C A G T A C T G A C T G A C T G A G T C C G T A G A T C G T C A G T A C T A G C G T A C

NR4A2/MA0160.1/Jaspar

Match Rank:4
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-AGGGCACTAA
AAGGTCAC---
 A C G T C G T A A C T G A C T G A C T G A G T C C G T A A G T C A C G T C G T A C G T A
C T G A C T G A A C T G C T A G G A C T A G T C C G T A T G A C A C G T A C G T A C G T

HIC2/MA0738.1/Jaspar

Match Rank:5
Score:0.66
Offset:-2
Orientation:reverse strand
Alignment:--AGGGCACTAA
NGTGGGCAT---
 A C G T A C G T C G T A A C T G A C T G A C T G A G T C C G T A A G T C A C G T C G T A C G T A
T C A G A T C G A G C T A C T G C A T G A C T G A G T C C T G A A G C T A C G T A C G T A C G T

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:6
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--AGGGCACTAA
TRAGGTCA----
 A C G T A C G T C G T A A C T G A C T G A C T G A G T C C G T A A G T C A C G T C G T A C G T A
G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A A C G T A C G T A C G T A C G T

THAP1/MA0597.1/Jaspar

Match Rank:7
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--AGGGCACTAA
TNNGGGCAG---
 A C G T A C G T C G T A A C T G A C T G A C T G A G T C C G T A A G T C A C G T C G T A C G T A
C A G T T C A G G T A C C A T G C A T G C T A G G T A C C T G A T C A G A C G T A C G T A C G T

Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer

Match Rank:8
Score:0.62
Offset:1
Orientation:forward strand
Alignment:AGGGCACTAA-
-AAGCACTTAA
 C G T A A C T G A C T G A C T G A G T C C G T A A G T C A C G T C G T A C G T A A C G T
A C G T T C G A T C G A T A C G G A T C G T C A G T A C C G A T A G C T G T C A T G C A

PH0121.1_Obox1/Jaspar

Match Rank:9
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---AGGGCACTAA----
TTAAGGGGATTAACTAC
 A C G T A C G T A C G T C G T A A C T G A C T G A C T G A G T C C G T A A G T C A C G T C G T A C G T A A C G T A C G T A C G T A C G T
C A G T C G A T T C G A T C G A C T A G C T A G C T A G A C T G G T C A A G C T G A C T C G T A C G T A G T A C C G A T G C T A A G T C

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:10
Score:0.60
Offset:1
Orientation:forward strand
Alignment:AGGGCACTAA-
-AASCACTCAA
 C G T A A C T G A C T G A C T G A G T C C G T A A G T C A C G T C G T A C G T A A C G T
A C G T C T G A C T G A T A G C G A T C G C T A G T A C A C G T G A T C T G C A C G T A