Information for 4-YGTTTGTCGC (Motif 11)

A G C T A C T G A G C T A C G T A C G T A C T G G A C T A T G C T C A G A T G C
Reverse Opposite:
A T C G A G T C T A C G C T G A A G T C C G T A T G C A C T G A A G T C T C G A
p-value:1e-9
log p-value:-2.286e+01
Information Content per bp:1.751
Number of Target Sequences with motif22.0
Percentage of Target Sequences with motif2.57%
Number of Background Sequences with motif208.5
Percentage of Background Sequences with motif0.45%
Average Position of motif in Targets40.6 +/- 29.2bp
Average Position of motif in Background50.6 +/- 27.3bp
Strand Bias (log2 ratio + to - strand density)1.8
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0032.1_IRC900814_1/Jaspar

Match Rank:1
Score:0.65
Offset:-2
Orientation:reverse strand
Alignment:--YGTTTGTCGC----
GNNATTTGTCGTAANN
 A C G T A C G T A G C T A C T G A G C T A C G T A C G T A C T G G A C T A T G C T C A G A T G C A C G T A C G T A C G T A C G T
T C A G G A T C G C A T C G T A C G A T C G A T G A C T A C T G G A C T A G T C A C T G C A G T T C G A C T G A G C T A G C A T

Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer

Match Rank:2
Score:0.64
Offset:0
Orientation:forward strand
Alignment:YGTTTGTCGC
CCATTGTTNY
 A G C T A C T G A G C T A C G T A C G T A C T G G A C T A T G C T C A G A T G C
A T G C G T A C C G T A A G C T G C A T T A C G A G C T A G C T A G T C A G C T

PB0166.1_Sox12_2/Jaspar

Match Rank:3
Score:0.64
Offset:-3
Orientation:reverse strand
Alignment:---YGTTTGTCGC---
ANTCCTTTGTCTNNNN
 A C G T A C G T A C G T A G C T A C T G A G C T A C G T A C G T A C T G G A C T A T G C T C A G A T G C A C G T A C G T A C G T
C G T A G C A T A C G T A G T C A T G C C G A T A G C T C G A T T C A G A C G T T A G C G A C T T C A G G C A T A C G T A C G T

POL007.1_BREd/Jaspar

Match Rank:4
Score:0.64
Offset:1
Orientation:forward strand
Alignment:YGTTTGTCGC
-GTTTGTT--
 A G C T A C T G A G C T A C G T A C G T A C T G G A C T A T G C T C A G A T G C
A C G T C T A G A C G T C A G T A C G T A C T G A C G T A C G T A C G T A C G T

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:5
Score:0.63
Offset:0
Orientation:forward strand
Alignment:YGTTTGTCGC
CCWTTGTYYB
 A G C T A C T G A G C T A C G T A C G T A C T G G A C T A T G C T C A G A T G C
A T G C A G T C G C A T A G C T A C G T T C A G C G A T A G C T G A T C A T C G

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:6
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:YGTTTGTCGC--
TGTCTGDCACCT
 A G C T A C T G A G C T A C G T A C G T A C T G G A C T A T G C T C A G A T G C A C G T A C G T
G C A T A C T G C G A T A G T C A C G T T A C G C A T G A G T C C G T A T A G C G A T C G A C T

MF0011.1_HMG_class/Jaspar

Match Rank:7
Score:0.63
Offset:2
Orientation:forward strand
Alignment:YGTTTGTCGC
--ATTGTT--
 A G C T A C T G A G C T A C G T A C G T A C T G G A C T A T G C T C A G A T G C
A C G T A C G T G C T A A C G T G A C T C T A G G C A T A G C T A C G T A C G T

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:8
Score:0.63
Offset:0
Orientation:forward strand
Alignment:YGTTTGTCGC
CCWTTGTY--
 A G C T A C T G A G C T A C G T A C G T A C T G G A C T A T G C T C A G A T G C
A T G C G A T C C G A T A C G T A C G T A C T G C A G T A G C T A C G T A C G T

Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer

Match Rank:9
Score:0.62
Offset:0
Orientation:forward strand
Alignment:YGTTTGTCGC
YCTTTGTTCC
 A G C T A C T G A G C T A C G T A C G T A C T G G A C T A T G C T C A G A T G C
A G T C A G T C C G A T A C G T A C G T A C T G A C G T A G C T A G T C A G T C

Sox3/MA0514.1/Jaspar

Match Rank:10
Score:0.62
Offset:0
Orientation:forward strand
Alignment:YGTTTGTCGC
CCTTTGTTTT
 A G C T A C T G A G C T A C G T A C G T A C T G G A C T A T G C T C A G A T G C
A T G C A G T C C G A T A C G T A C G T A T C G A C G T A G C T A G C T A G C T