Information for 6-CAGCAGGCCCTGCTGV (Motif 24)

A G T C C G T A A T C G A T G C C G T A A C T G A C T G A T G C A G T C A G T C A C G T A T C G A T G C A G C T A C T G T A C G
Reverse Opposite:
A T G C A G T C C T G A A T C G A T G C C G T A A C T G A C T G A T C G A G T C A G T C A C G T A T C G A T G C C G A T A C T G
p-value:1e-5
log p-value:-1.264e+01
Information Content per bp:1.871
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.44%
Number of Background Sequences with motif5.3
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets59.8 +/- 17.3bp
Average Position of motif in Background67.6 +/- 30.7bp
Strand Bias (log2 ratio + to - strand density)-1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Zfx/MA0146.2/Jaspar

Match Rank:1
Score:0.60
Offset:3
Orientation:reverse strand
Alignment:CAGCAGGCCCTGCTGV-
---CAGGCCNNGGCCNN
 A G T C C G T A A T C G A T G C C G T A A C T G A C T G A T G C A G T C A G T C A C G T A T C G A T G C A G C T A C T G T A C G A C G T
A C G T A C G T A C G T A T G C C T G A C T A G A C T G T A G C A G T C A C G T T G A C C T A G T A C G G A T C A T G C T A G C T A G C

ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer

Match Rank:2
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:CAGCAGGCCCTGCTGV
--CTAGGCCT------
 A G T C C G T A A T C G A T G C C G T A A C T G A C T G A T G C A G T C A G T C A C G T A T C G A T G C A G C T A C T G T A C G
A C G T A C G T T A G C A G C T C T G A A C T G A T C G A T G C G T A C A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:3
Score:0.57
Offset:5
Orientation:reverse strand
Alignment:CAGCAGGCCCTGCTGV-
-----CCCCCTGCTGTG
 A G T C C G T A A T C G A T G C C G T A A C T G A C T G A T G C A G T C A G T C A C G T A T C G A T G C A G C T A C T G T A C G A C G T
A C G T A C G T A C G T A C G T A C G T G A T C G A T C G A T C G T A C G T A C G C A T C T A G A G T C G C A T A C T G C G A T A C T G

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:4
Score:0.56
Offset:-3
Orientation:reverse strand
Alignment:---CAGCAGGCCCTGCTGV
DCTCAGCAGG---------
 A C G T A C G T A C G T A G T C C G T A A T C G A T G C C G T A A C T G A C T G A T G C A G T C A G T C A C G T A T C G A T G C A G C T A C T G T A C G
C A G T G T A C G C A T A G T C G C T A A C T G A G T C C T G A A C T G A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer

Match Rank:5
Score:0.56
Offset:4
Orientation:forward strand
Alignment:CAGCAGGCCCTGCTGV
----AGGCCTNG----
 A G T C C G T A A T C G A T G C C G T A A C T G A C T G A T G C A G T C A G T C A C G T A T C G A T G C A G C T A C T G T A C G
A C G T A C G T A C G T A C G T C T G A A C T G A C T G A G T C A G T C A G C T C T A G T A C G A C G T A C G T A C G T A C G T

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:6
Score:0.55
Offset:3
Orientation:forward strand
Alignment:CAGCAGGCCCTGCTGV--
---GGCCYCCTGCTGDGH
 A G T C C G T A A T C G A T G C C G T A A C T G A C T G A T G C A G T C A G T C A C G T A T C G A T G C A G C T A C T G T A C G A C G T A C G T
A C G T A C G T A C G T C A T G T A C G T A G C G A T C G A T C A T G C G T A C G A C T T C A G A T G C C G A T A T C G C A G T A C T G G T A C

PB0207.1_Zic3_2/Jaspar

Match Rank:7
Score:0.55
Offset:-5
Orientation:forward strand
Alignment:-----CAGCAGGCCCTGCTGV
GAGCACAGCAGGACA------
 A C G T A C G T A C G T A C G T A C G T A G T C C G T A A T C G A T G C C G T A A C T G A C T G A T G C A G T C A G T C A C G T A T C G A T G C A G C T A C T G T A C G
C A T G C G T A C T A G T G A C C T G A A G T C C G T A C T A G A G T C C T G A A C T G A C T G G T C A T A G C C G T A A C G T A C G T A C G T A C G T A C G T A C G T

PB0205.1_Zic1_2/Jaspar

Match Rank:8
Score:0.55
Offset:-5
Orientation:forward strand
Alignment:-----CAGCAGGCCCTGCTGV
CCACACAGCAGGAGA------
 A C G T A C G T A C G T A C G T A C G T A G T C C G T A A T C G A T G C C G T A A C T G A C T G A T G C A G T C A G T C A C G T A T C G A T G C A G C T A C T G T A C G
A G T C G T A C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A A C G T A C G T A C G T A C G T A C G T A C G T

PB0206.1_Zic2_2/Jaspar

Match Rank:9
Score:0.53
Offset:-5
Orientation:forward strand
Alignment:-----CAGCAGGCCCTGCTGV
CCACACAGCAGGAGA------
 A C G T A C G T A C G T A C G T A C G T A G T C C G T A A T C G A T G C C G T A A C T G A C T G A T G C A G T C A G T C A C G T A T C G A T G C A G C T A C T G T A C G
G A T C G A T C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A A C G T A C G T A C G T A C G T A C G T A C G T

POL006.1_BREu/Jaspar

Match Rank:10
Score:0.51
Offset:1
Orientation:forward strand
Alignment:CAGCAGGCCCTGCTGV
-AGCGCGCC-------
 A G T C C G T A A T C G A T G C C G T A A C T G A C T G A T G C A G T C A G T C A C G T A T C G A T G C A G C T A C T G T A C G
A C G T T G C A T A C G T A G C T C A G T G A C A C T G A G T C A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T