Information for 12-TCCCGCTGACCTG (Motif 20)

A C G T A G T C A G T C A G T C A C T G A G T C A C G T A C T G C G T A A G T C A G T C A C G T A T C G
Reverse Opposite:
A T G C C G T A A C T G A C T G A C G T A G T C C G T A A C T G A G T C C T A G A C T G A C T G T C G A
p-value:1e-8
log p-value:-1.912e+01
Information Content per bp:1.914
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.55%
Number of Background Sequences with motif3.8
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets42.4 +/- 22.7bp
Average Position of motif in Background34.4 +/- 11.1bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NR2F1/MA0017.2/Jaspar

Match Rank:1
Score:0.69
Offset:2
Orientation:reverse strand
Alignment:TCCCGCTGACCTG--
--CNNTTGACCTTTG
 A C G T A G T C A G T C A G T C A C T G A G T C A C G T A C T G C G T A A G T C A G T C A C G T A T C G A C G T A C G T
A C G T A C G T G A T C A G T C A G T C C A G T A G C T A C T G C G T A A G T C A T G C A G C T G A C T C G A T C A T G

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:2
Score:0.69
Offset:6
Orientation:reverse strand
Alignment:TCCCGCTGACCTG-
------TGACCTYA
 A C G T A G T C A G T C A G T C A C T G A G T C A C G T A C T G C G T A A G T C A G T C A C G T A T C G A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A G C T C T A G G C T A T G A C A T G C A G C T A G T C C G T A

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:3
Score:0.69
Offset:6
Orientation:reverse strand
Alignment:TCCCGCTGACCTG
------TGACCT-
 A C G T A G T C A G T C A G T C A C T G A G T C A C G T A C T G C G T A A G T C A G T C A C G T A T C G
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C A T G G C T A G T A C G T A C G A C T A C G T

ESR2/MA0258.2/Jaspar

Match Rank:4
Score:0.68
Offset:-3
Orientation:reverse strand
Alignment:---TCCCGCTGACCTG
AGGNCANNGTGACCT-
 A C G T A C G T A C G T A C G T A G T C A G T C A G T C A C T G A G T C A C G T A C T G C G T A A G T C A G T C A C G T A T C G
C T G A C T A G C T A G C A G T A G T C C G T A A T C G A C T G T A C G G C A T T A C G T G C A G A T C G T A C G A C T A C G T

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:5
Score:0.67
Offset:1
Orientation:forward strand
Alignment:TCCCGCTGACCTG
-CCTGCTGAGH--
 A C G T A G T C A G T C A G T C A C T G A G T C A C G T A C T G C G T A A G T C A G T C A C G T A T C G
A C G T A G T C G T A C A G C T C T A G A G T C C G A T A C T G C G T A A C T G G T C A A C G T A C G T

RORA/MA0071.1/Jaspar

Match Rank:6
Score:0.65
Offset:6
Orientation:reverse strand
Alignment:TCCCGCTGACCTG---
------TGACCTTGAT
 A C G T A G T C A G T C A G T C A C T G A G T C A C G T A C T G C G T A A G T C A G T C A C G T A T C G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G C G T A A G T C A G T C A G C T G C A T A C T G C G T A G C A T

Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer

Match Rank:7
Score:0.65
Offset:-2
Orientation:reverse strand
Alignment:--TCCCGCTGACCTG-
TGACCCAGTGACCTAC
 A C G T A C G T A C G T A G T C A G T C A G T C A C T G A G T C A C G T A C T G C G T A A G T C A G T C A C G T A T C G A C G T
G C A T T A C G G C T A A T G C G T A C A G T C T G C A T A C G C G A T C A T G T G C A T G A C G A T C G A C T T C G A T A G C

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:8
Score:0.65
Offset:6
Orientation:reverse strand
Alignment:TCCCGCTGACCTG-
------TGACCYCT
 A C G T A G T C A G T C A G T C A C T G A G T C A C G T A C T G C G T A A G T C A G T C A C G T A T C G A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A G C T T C A G T G C A G T A C T G A C A G C T A G T C A G C T

ESR1/MA0112.3/Jaspar

Match Rank:9
Score:0.65
Offset:-4
Orientation:forward strand
Alignment:----TCCCGCTGACCTG
AAGGTCACGGTGACCTG
 A C G T A C G T A C G T A C G T A C G T A G T C A G T C A G T C A C T G A G T C A C G T A C T G C G T A A G T C A G T C A C G T A T C G
C T G A T C G A A C T G C T A G A C G T G A T C C T G A T G A C T A C G T C A G A G C T C T A G T C G A A T G C G T A C A G C T A C T G

NRL/MA0842.1/Jaspar

Match Rank:10
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-TCCCGCTGACCTG
AATTTGCTGAC---
 A C G T A C G T A G T C A G T C A G T C A C T G A G T C A C G T A C T G C G T A A G T C A G T C A C G T A T C G
C G T A C G T A G C A T G C A T G A C T T C A G G T A C G C A T C A T G G C T A A G T C A C G T A C G T A C G T