Information for 13-CCACAACAGG (Motif 36)

A G T C A G T C G T C A A G T C C G T A G C T A A T G C C G T A A C T G A C T G
Reverse Opposite:
A G T C G T A C A C G T A T C G C G A T A C G T A C T G A C G T T C A G A C T G
p-value:1e-7
log p-value:-1.618e+01
Information Content per bp:1.822
Number of Target Sequences with motif12.0
Percentage of Target Sequences with motif1.56%
Number of Background Sequences with motif97.6
Percentage of Background Sequences with motif0.20%
Average Position of motif in Targets47.7 +/- 25.1bp
Average Position of motif in Background49.6 +/- 24.6bp
Strand Bias (log2 ratio + to - strand density)1.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:1
Score:0.69
Offset:1
Orientation:forward strand
Alignment:CCACAACAGG---
-CACAGCAGGGGG
 A G T C A G T C G T C A A G T C C G T A G C T A A T G C C G T A A C T G A C T G A C G T A C G T A C G T
A C G T T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G

PB0122.1_Foxk1_2/Jaspar

Match Rank:2
Score:0.66
Offset:-4
Orientation:forward strand
Alignment:----CCACAACAGG-
CAAACAACAACACCT
 A C G T A C G T A C G T A C G T A G T C A G T C G T C A A G T C C G T A G C T A A T G C C G T A A C T G A C T G A C G T
G T A C G C T A G T C A C T G A G A T C T G C A T C G A A G T C T C G A C G T A G A T C C G T A G A T C G T A C G A C T

SCRT1/MA0743.1/Jaspar

Match Rank:3
Score:0.65
Offset:0
Orientation:forward strand
Alignment:CCACAACAGG-----
GAGCAACAGGTGGTT
 A G T C A G T C G T C A A G T C C G T A G C T A A T G C C G T A A C T G A C T G A C G T A C G T A C G T A C G T A C G T
T C A G G C T A A C T G G A T C G T C A C G T A G T A C C G T A C T A G A C T G A G C T C A T G A C T G A G C T G A C T

SCRT2/MA0744.1/Jaspar

Match Rank:4
Score:0.65
Offset:0
Orientation:forward strand
Alignment:CCACAACAGG---
ATGCAACAGGTGG
 A G T C A G T C G T C A A G T C C G T A G C T A A T G C C G T A A C T G A C T G A C G T A C G T A C G T
T C G A G C A T A C T G G T A C T G C A C G T A G T A C G T C A T C A G A T C G G C A T C A T G A T C G

PB0207.1_Zic3_2/Jaspar

Match Rank:5
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--CCACAACAGG---
GAGCACAGCAGGACA
 A C G T A C G T A G T C A G T C G T C A A G T C C G T A G C T A A T G C C G T A A C T G A C T G A C G T A C G T A C G T
C A T G C G T A C T A G T G A C C T G A A G T C C G T A C T A G A G T C C T G A A C T G A C T G G T C A T A G C C G T A

PB0205.1_Zic1_2/Jaspar

Match Rank:6
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--CCACAACAGG---
CCACACAGCAGGAGA
 A C G T A C G T A G T C A G T C G T C A A G T C C G T A G C T A A T G C C G T A A C T G A C T G A C G T A C G T A C G T
A G T C G T A C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A

PB0120.1_Foxj1_2/Jaspar

Match Rank:7
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---CCACAACAGG--
ATGTCACAACAACAC
 A C G T A C G T A C G T A G T C A G T C G T C A A G T C C G T A G C T A A T G C C G T A A C T G A C T G A C G T A C G T
C G T A A G C T T C A G A C G T T A G C T C G A A G T C C T G A G T C A T G A C C G T A C T G A A T G C T C G A G T A C

PB0206.1_Zic2_2/Jaspar

Match Rank:8
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--CCACAACAGG---
CCACACAGCAGGAGA
 A C G T A C G T A G T C A G T C G T C A A G T C C G T A G C T A A T G C C G T A A C T G A C T G A C G T A C G T A C G T
G A T C G A T C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A

RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer

Match Rank:9
Score:0.63
Offset:-4
Orientation:forward strand
Alignment:----CCACAACAGG
NWAACCACADNN--
 A C G T A C G T A C G T A C G T A G T C A G T C G T C A A G T C C G T A G C T A A T G C C G T A A C T G A C T G
T G A C G C T A T C G A T G C A A G T C A G T C C G T A A G T C C G T A C T G A G C T A G T A C A C G T A C G T

PB0121.1_Foxj3_2/Jaspar

Match Rank:10
Score:0.62
Offset:-4
Orientation:forward strand
Alignment:----CCACAACAGG---
AACACCAAAACAAAGGA
 A C G T A C G T A C G T A C G T A G T C A G T C G T C A A G T C C G T A G C T A A T G C C G T A A C T G A C T G A C G T A C G T A C G T
G T C A C G T A A G T C C T G A G A T C G A T C T G C A G C T A G T C A C G T A A G T C C G T A C G T A G C T A C A T G T A C G C G T A