Information for 3-GAAACCACAA (Motif 3)

C A T G T G C A T G C A C T G A T G A C A G T C T C G A A G T C G T C A T C G A
Reverse Opposite:
A G C T C A G T T C A G A G C T T C A G A C T G G A C T A C G T A C G T G T A C
p-value:1e-25
log p-value:-5.875e+01
Information Content per bp:1.575
Number of Target Sequences with motif169.0
Percentage of Target Sequences with motif21.98%
Number of Background Sequences with motif4426.3
Percentage of Background Sequences with motif9.23%
Average Position of motif in Targets54.2 +/- 25.8bp
Average Position of motif in Background49.9 +/- 30.1bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.18
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RUNX3/MA0684.1/Jaspar

Match Rank:1
Score:0.90
Offset:1
Orientation:forward strand
Alignment:GAAACCACAA-
-AAACCGCAAA
 C A T G T G C A T G C A C T G A T G A C A G T C T C G A A G T C G T C A T C G A A C G T
A C G T G C T A T C G A T G C A G T A C A T G C T C A G A T G C T G C A T C G A G C T A

RUNX2/MA0511.2/Jaspar

Match Rank:2
Score:0.89
Offset:1
Orientation:forward strand
Alignment:GAAACCACAA
-AAACCGCAA
 C A T G T G C A T G C A C T G A T G A C A G T C T C G A A G T C G T C A T C G A
A C G T G C T A C T G A G T C A A G T C A G T C C T A G A G T C T G C A T C G A

RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer

Match Rank:3
Score:0.89
Offset:1
Orientation:forward strand
Alignment:GAAACCACAA-
-AAACCACANN
 C A T G T G C A T G C A C T G A T G A C A G T C T C G A A G T C G T C A T C G A A C G T
A C G T G C T A C T G A T C G A A G T C A G T C C T G A A G T C G T C A C T G A T G C A

RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer

Match Rank:4
Score:0.87
Offset:0
Orientation:forward strand
Alignment:GAAACCACAA
NAAACCACAG
 C A T G T G C A T G C A C T G A T G A C A G T C T C G A A G T C G T C A T C G A
T A G C G C T A T C G A C T G A A G T C A G T C C T G A A G T C C G T A C T A G

RUNX1/MA0002.2/Jaspar

Match Rank:5
Score:0.85
Offset:1
Orientation:reverse strand
Alignment:GAAACCACAA--
-AAACCACAGAN
 C A T G T G C A T G C A C T G A T G A C A G T C T C G A A G T C G T C A T C G A A C G T A C G T
A C G T G C T A C T G A T C G A T G A C G T A C C T G A T A G C G C T A T C A G T C G A T G A C

RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer

Match Rank:6
Score:0.83
Offset:0
Orientation:forward strand
Alignment:GAAACCACAA--
NWAACCACADNN
 C A T G T G C A T G C A C T G A T G A C A G T C T C G A A G T C G T C A T C G A A C G T A C G T
T G A C G C T A T C G A T G C A A G T C A G T C C G T A A G T C C G T A C T G A G C T A G T A C

RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:7
Score:0.82
Offset:1
Orientation:reverse strand
Alignment:GAAACCACAA-
-AAACCACAGC
 C A T G T G C A T G C A C T G A T G A C A G T C T C G A A G T C G T C A T C G A A C G T
A C G T G C T A T C G A T G C A T G A C G T A C T G C A A G T C C T G A C T A G T G A C

IRF8/MA0652.1/Jaspar

Match Rank:8
Score:0.71
Offset:-2
Orientation:forward strand
Alignment:--GAAACCACAA--
TCGAAACCGAAACT
 A C G T A C G T C A T G T G C A T G C A C T G A T G A C A G T C T C G A A G T C G T C A T C G A A C G T A C G T
G A C T G A T C C T A G G T C A C G T A C G T A T A G C G A T C A C T G C T G A C G T A G T C A A T G C G A C T

IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer

Match Rank:9
Score:0.71
Offset:-3
Orientation:forward strand
Alignment:---GAAACCACAA
ACTGAAACCA---
 A C G T A C G T A C G T C A T G T G C A T G C A C T G A T G A C A G T C T C G A A G T C G T C A T C G A
G C T A T A G C A G C T A T C G G T C A C G T A G C T A A T G C G A T C C T G A A C G T A C G T A C G T

PB0034.1_Irf4_1/Jaspar

Match Rank:10
Score:0.71
Offset:-6
Orientation:forward strand
Alignment:------GAAACCACAA
CGTATCGAAACCAAA-
 A C G T A C G T A C G T A C G T A C G T A C G T C A T G T G C A T G C A C T G A T G A C A G T C T C G A A G T C G T C A T C G A
T G A C C T A G C G A T C G T A G A C T A G T C C T A G T C G A C G T A C G T A T A G C G A T C C T G A G T C A C G T A A C G T