Information for 18-VAGRGGCTYSKCTGCT (Motif 25)

T A C G T G C A T C A G C T A G C T A G A C T G G A T C G A C T G A C T T A C G A C T G A G T C C G A T A T C G G A T C A C G T
Reverse Opposite:
T C G A C T A G A T G C G C T A C T A G T G A C A T G C C T G A C T G A C A T G A G T C G A T C G A T C A G T C A C G T A T C G
p-value:1e-9
log p-value:-2.189e+01
Information Content per bp:1.594
Number of Target Sequences with motif43.0
Percentage of Target Sequences with motif5.59%
Number of Background Sequences with motif883.2
Percentage of Background Sequences with motif1.84%
Average Position of motif in Targets51.7 +/- 23.6bp
Average Position of motif in Background50.1 +/- 27.1bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0151.1_Myf6_2/Jaspar

Match Rank:1
Score:0.56
Offset:4
Orientation:reverse strand
Alignment:VAGRGGCTYSKCTGCT---
----GGNGCGNCTGTTNNN
 T A C G T G C A T C A G C T A G C T A G A C T G G A T C G A C T G A C T T A C G A C T G A G T C C G A T A T C G G A T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C T A G A C T G G A C T A T C G A T G C A T C G A C T G G A T C A G C T C T A G A C G T A G C T A C T G A T G C A G C T

Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer

Match Rank:2
Score:0.55
Offset:2
Orientation:forward strand
Alignment:VAGRGGCTYSKCTGCT-
--GGGGCTYGKCTGGGA
 T A C G T G C A T C A G C T A G C T A G A C T G G A T C G A C T G A C T T A C G A C T G A G T C C G A T A T C G G A T C A C G T A C G T
A C G T A C G T C T A G C A T G C A T G T A C G A G T C G C A T A G C T C T A G A C G T A G T C G A C T A C T G A C T G A C T G T C G A

POL010.1_DCE_S_III/Jaspar

Match Rank:3
Score:0.53
Offset:12
Orientation:reverse strand
Alignment:VAGRGGCTYSKCTGCT-
------------NGCTN
 T A C G T G C A T C A G C T A G C T A G A C T G G A T C G A C T G A C T T A C G A C T G A G T C C G A T A T C G G A T C A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A C G A C T G A G T C A C G T A T C G

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:4
Score:0.52
Offset:0
Orientation:forward strand
Alignment:VAGRGGCTYSKCTGCT
GTCATGCHTGRCTGS-
 T A C G T G C A T C A G C T A G C T A G A C T G G A T C G A C T G A C T T A C G A C T G A G T C C G A T A T C G G A T C A C G T
A C T G A G C T A G T C G T C A A G C T T C A G A T G C G A T C G C A T A T C G T C G A T A G C C G A T C A T G T A G C A C G T

POL003.1_GC-box/Jaspar

Match Rank:5
Score:0.50
Offset:0
Orientation:forward strand
Alignment:VAGRGGCTYSKCTGCT
AGGGGGCGGGGCTG--
 T A C G T G C A T C A G C T A G C T A G A C T G G A T C G A C T G A C T T A C G A C T G A G T C C G A T A T C G G A T C A C G T
C G T A C T A G C A T G T C A G A C T G C T A G G T A C C T A G A C T G C T A G C A T G A G T C A G C T C A T G A C G T A C G T

PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer

Match Rank:6
Score:0.50
Offset:-1
Orientation:reverse strand
Alignment:-VAGRGGCTYSKCTGCT
NGTCACGCTTGGCTGC-
 A C G T T A C G T G C A T C A G C T A G C T A G A C T G G A T C G A C T G A C T T A C G A C T G A G T C C G A T A T C G G A T C A C G T
C T A G A C T G A G C T A G T C G T C A G A T C T C A G A T G C G C A T G A C T A T C G T C A G T A G C G A C T C T A G T G A C A C G T

KLF14/MA0740.1/Jaspar

Match Rank:7
Score:0.49
Offset:-1
Orientation:reverse strand
Alignment:-VAGRGGCTYSKCTGCT
AAGGGGGCGTGGCC---
 A C G T T A C G T G C A T C A G C T A G C T A G A C T G G A T C G A C T G A C T T A C G A C T G A G T C C G A T A T C G G A T C A C G T
C T G A C T G A C T A G C A T G T C A G T C A G A T C G A G T C C A T G A C G T T C A G C A T G A G T C G T A C A C G T A C G T A C G T

POL006.1_BREu/Jaspar

Match Rank:8
Score:0.49
Offset:4
Orientation:reverse strand
Alignment:VAGRGGCTYSKCTGCT
----GGCGCGCT----
 T A C G T G C A T C A G C T A G C T A G A C T G G A T C G A C T G A C T T A C G A C T G A G T C C G A T A T C G G A T C A C G T
A C G T A C G T A C G T A C G T C T A G T A C G A G T C A C T G A G T C A T C G A T G C A C G T A C G T A C G T A C G T A C G T

ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer

Match Rank:9
Score:0.48
Offset:3
Orientation:forward strand
Alignment:VAGRGGCTYSKCTGCT
---AGGCCTNG-----
 T A C G T G C A T C A G C T A G C T A G A C T G G A T C G A C T G A C T T A C G A C T G A G T C C G A T A T C G G A T C A C G T
A C G T A C G T A C G T C T G A A C T G A C T G A G T C A G T C A G C T C T A G T A C G A C G T A C G T A C G T A C G T A C G T

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:10
Score:0.48
Offset:7
Orientation:reverse strand
Alignment:VAGRGGCTYSKCTGCT---
-------CCCCCTGCTGTG
 T A C G T G C A T C A G C T A G C T A G A C T G G A T C G A C T G A C T T A C G A C T G A G T C C G A T A T C G G A T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T G A T C G A T C G A T C G T A C G T A C G C A T C T A G A G T C G C A T A C T G C G A T A C T G