Information for 2-CAACACACAA (Motif 8)

T A G C C G T A C T G A A G T C C G T A A G T C G T C A G A T C C G T A T C G A
Reverse Opposite:
A G C T C G A T C T A G A C G T A C T G A C G T T C A G A G C T A C G T A T C G
p-value:1e-10
log p-value:-2.341e+01
Information Content per bp:1.843
Number of Target Sequences with motif19.0
Percentage of Target Sequences with motif2.31%
Number of Background Sequences with motif158.2
Percentage of Background Sequences with motif0.32%
Average Position of motif in Targets44.9 +/- 27.9bp
Average Position of motif in Background50.3 +/- 27.1bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0208.1_Zscan4_2/Jaspar

Match Rank:1
Score:0.71
Offset:-2
Orientation:forward strand
Alignment:--CAACACACAA----
CGAAGCACACAAAATA
 A C G T A C G T T A G C C G T A C T G A A G T C C G T A A G T C G T C A G A T C C G T A T C G A A C G T A C G T A C G T A C G T
G T A C T A C G G C T A T C G A C T A G T G A C C G T A G T A C C T G A G A T C G C T A G T C A G T C A G C T A G C A T T C G A

FOXH1/MA0479.1/Jaspar

Match Rank:2
Score:0.68
Offset:-2
Orientation:forward strand
Alignment:--CAACACACAA
TCCAATCCACA-
 A C G T A C G T T A G C C G T A C T G A A G T C C G T A A G T C G T C A G A T C C G T A T C G A
A G C T A G T C T A G C C G T A C G T A A C G T G T A C G T A C C G T A A G T C C G T A A C G T

Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer

Match Rank:3
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-CAACACACAA-
SSAATCCACANN
 A C G T T A G C C G T A C T G A A G T C C G T A A G T C G T C A G A T C C G T A T C G A A C G T
A T G C T A G C C T G A C G T A A C G T G T A C G T A C C T G A A G T C C G T A C T G A G T A C

PB0130.1_Gm397_2/Jaspar

Match Rank:4
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--CAACACACAA----
AGCGGCACACACGCAA
 A C G T A C G T T A G C C G T A C T G A A G T C C G T A A G T C G T C A G A T C C G T A T C G A A C G T A C G T A C G T A C G T
C T G A T C A G G T A C T C A G C T A G T G A C C T G A G A T C T C G A A T G C T G C A G T A C A C T G G A T C T G C A G T C A

PB0121.1_Foxj3_2/Jaspar

Match Rank:5
Score:0.63
Offset:-5
Orientation:forward strand
Alignment:-----CAACACACAA--
AACACCAAAACAAAGGA
 A C G T A C G T A C G T A C G T A C G T T A G C C G T A C T G A A G T C C G T A A G T C G T C A G A T C C G T A T C G A A C G T A C G T
G T C A C G T A A G T C C T G A G A T C G A T C T G C A G C T A G T C A C G T A A G T C C G T A C G T A G C T A C A T G T A C G C G T A

PB0123.1_Foxl1_2/Jaspar

Match Rank:6
Score:0.61
Offset:-4
Orientation:forward strand
Alignment:----CAACACACAA--
ATATCAAAACAAAACA
 A C G T A C G T A C G T A C G T T A G C C G T A C T G A A G T C C G T A A G T C G T C A G A T C C G T A T C G A A C G T A C G T
G C T A C G A T C G T A C G A T G A T C G C T A G C T A G T C A C G T A A G T C C G T A C G T A G T C A C G T A G T A C G T C A

PB0168.1_Sox14_2/Jaspar

Match Rank:7
Score:0.61
Offset:1
Orientation:forward strand
Alignment:CAACACACAA------
-CTCACACAATGGCGC
 T A G C C G T A C T G A A G T C C G T A A G T C G T C A G A T C C G T A T C G A A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A G T C A C G T A G T C T C G A T A G C C G T A A T G C G T C A G T C A G C A T C T A G T C A G G T A C A C T G A T G C

POL007.1_BREd/Jaspar

Match Rank:8
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:CAACACACAA
-NANANAC--
 T A G C C G T A C T G A A G T C C G T A A G T C G T C A G A T C C G T A T C G A
A C G T T G C A T G C A T G A C T G C A G T C A T C G A G A T C A C G T A C G T

Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer

Match Rank:9
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-CAACACACAA
GCCACACCCA-
 A C G T T A G C C G T A C T G A A G T C C G T A A G T C G T C A G A T C C G T A T C G A
C T A G G T A C A G T C T G C A A G T C C T G A A G T C A G T C A G T C G C T A A C G T

PB0166.1_Sox12_2/Jaspar

Match Rank:10
Score:0.59
Offset:0
Orientation:forward strand
Alignment:CAACACACAA------
AAACAGACAAAGGAAT
 T A G C C G T A C T G A A G T C C G T A A G T C G T C A G A T C C G T A T C G A A C G T A C G T A C G T A C G T A C G T A C G T
T G C A T G C A C G T A A G C T C T G A A T C G C G T A A G T C G C T A T C G A G C T A T A C G T C A G T G C A C G T A G A C T