Information for 1-GCAGGTCTCCTGCAGC (Motif 5)

A T C G A G T C C G T A A C T G A C T G A C G T A G T C A C G T A G T C A G T C C G A T A C T G A G T C C G T A A C T G A G T C
Reverse Opposite:
A C T G A G T C A C G T C T A G A G T C C G T A A C T G A C T G G T C A A C T G G T C A A G T C A G T C G A C T A C T G A T G C
p-value:1e-10
log p-value:-2.523e+01
Information Content per bp:1.877
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.61%
Number of Background Sequences with motif1.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets50.2 +/- 24.7bp
Average Position of motif in Background21.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)-2.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:1
Score:0.60
Offset:3
Orientation:forward strand
Alignment:GCAGGTCTCCTGCAGC--
---GGCCYCCTGCTGDGH
 A T C G A G T C C G T A A C T G A C T G A C G T A G T C A C G T A G T C A G T C C G A T A C T G A G T C C G T A A C T G A G T C A C G T A C G T
A C G T A C G T A C G T C A T G T A C G T A G C G A T C G A T C A T G C G T A C G A C T T C A G A T G C C G A T A T C G C A G T A C T G G T A C

Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer

Match Rank:2
Score:0.54
Offset:3
Orientation:forward strand
Alignment:GCAGGTCTCCTGCAGC
---SNGCACCTGCHS-
 A T C G A G T C C G T A A C T G A C T G A C G T A G T C A C G T A G T C A G T C C G A T A C T G A G T C C G T A A C T G A G T C
A C G T A C G T A C G T T A C G C T A G T A C G A G T C C G T A A G T C A G T C A C G T A C T G A G T C G A T C T A G C A C G T

PB0206.1_Zic2_2/Jaspar

Match Rank:3
Score:0.53
Offset:5
Orientation:reverse strand
Alignment:GCAGGTCTCCTGCAGC----
-----TCNCCTGCTGNGNNN
 A T C G A G T C C G T A A C T G A C T G A C G T A G T C A C G T A G T C A G T C C G A T A C T G A G T C C G T A A C T G A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T G C A T A G T C A C G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G A C T C A T G C T A G

PB0205.1_Zic1_2/Jaspar

Match Rank:4
Score:0.53
Offset:5
Orientation:reverse strand
Alignment:GCAGGTCTCCTGCAGC----
-----TNTCCTGCTGTGNNG
 A T C G A G T C C G T A A C T G A C T G A C G T A G T C A C G T A G T C A G T C C G A T A C T G A G T C C G T A A C T G A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T G C A T A G T C C A G T T G A C G T A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G C A T C A T G T C A G

ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:5
Score:0.53
Offset:4
Orientation:reverse strand
Alignment:GCAGGTCTCCTGCAGC
----GGCTCYAKCAYC
 A T C G A G T C C G T A A C T G A C T G A C G T A G T C A C G T A G T C A G T C C G A T A C T G A G T C C G T A A C T G A G T C
A C G T A C G T A C G T A C G T C A T G A C T G A G T C A C G T A G T C G A T C C G T A A C T G T A G C C T G A A G C T T A G C

E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer

Match Rank:6
Score:0.51
Offset:4
Orientation:forward strand
Alignment:GCAGGTCTCCTGCAGC
----NNCACCTGNN--
 A T C G A G T C C G T A A C T G A C T G A C G T A G T C A C G T A G T C A G T C C G A T A C T G A G T C C G T A A C T G A G T C
A C G T A C G T A C G T A C G T A T G C T G C A A G T C C G T A A G T C A G T C A C G T A C T G A T G C G T C A A C G T A C G T

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:7
Score:0.50
Offset:5
Orientation:reverse strand
Alignment:GCAGGTCTCCTGCAGC-
-----CCCCCTGCTGTG
 A T C G A G T C C G T A A C T G A C T G A C G T A G T C A C G T A G T C A G T C C G A T A C T G A G T C C G T A A C T G A G T C A C G T
A C G T A C G T A C G T A C G T A C G T G A T C G A T C G A T C G T A C G T A C G C A T C T A G A G T C G C A T A C T G C G A T A C T G

PB0207.1_Zic3_2/Jaspar

Match Rank:8
Score:0.50
Offset:5
Orientation:reverse strand
Alignment:GCAGGTCTCCTGCAGC----
-----NNTCCTGCTGTGNNN
 A T C G A G T C C G T A A C T G A C T G A C G T A G T C A C G T A G T C A G T C C G A T A C T G A G T C C G T A A C T G A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T G C A T A T C G C A G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G G A C T A C T G G A T C G C A T G T A C

ZIC4/MA0751.1/Jaspar

Match Rank:9
Score:0.50
Offset:3
Orientation:forward strand
Alignment:GCAGGTCTCCTGCAGC--
---GACCCCCCGCTGTGC
 A T C G A G T C C G T A A C T G A C T G A C G T A G T C A C G T A G T C A G T C C G A T A C T G A G T C C G T A A C T G A G T C A C G T A C G T
A C G T A C G T A C G T A C T G T C G A G T A C G T A C G T A C G T A C G T A C G A T C C T A G A G T C C A G T C T A G G A C T A C T G G T A C

POL010.1_DCE_S_III/Jaspar

Match Rank:10
Score:0.49
Offset:12
Orientation:forward strand
Alignment:GCAGGTCTCCTGCAGC-
------------CAGCC
 A T C G A G T C C G T A A C T G A C T G A C G T A G T C A C G T A G T C A G T C C G A T A C T G A G T C C G T A A C T G A G T C A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A G C C G T A A C T G A G T C A T G C