Information for 1-CCACCTTAAA (Motif 4)

A G T C G T A C G C T A A T G C G T A C G A C T G C A T G C T A C G T A C T G A
Reverse Opposite:
G A C T G C A T C G A T C G T A C T G A C A T G T A C G C G A T A C T G T C A G
p-value:1e-11
log p-value:-2.686e+01
Information Content per bp:1.668
Number of Target Sequences with motif24.0
Percentage of Target Sequences with motif2.91%
Number of Background Sequences with motif223.6
Percentage of Background Sequences with motif0.46%
Average Position of motif in Targets52.1 +/- 23.5bp
Average Position of motif in Background49.4 +/- 26.9bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.04
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0111.1_Nkx2-2/Jaspar

Match Rank:1
Score:0.66
Offset:-4
Orientation:forward strand
Alignment:----CCACCTTAAA---
ATAACCACTTGAAAATT
 A C G T A C G T A C G T A C G T A G T C G T A C G C T A A T G C G T A C G A C T G C A T G C T A C G T A C T G A A C G T A C G T A C G T
G C A T C G A T T C G A C T G A T A G C A G T C G C T A G T A C C G A T A G C T T C A G C G T A T C G A C G T A C G T A A C G T C G A T

PH0114.1_Nkx2-5/Jaspar

Match Rank:2
Score:0.65
Offset:-4
Orientation:forward strand
Alignment:----CCACCTTAAA--
TAAGCCACTTGAATTT
 A C G T A C G T A C G T A C G T A G T C G T A C G C T A A T G C G T A C G A C T G C A T G C T A C G T A C T G A A C G T A C G T
G A C T C T G A C T G A C A T G T A G C A G T C G C T A G T A C A C G T G A C T T C A G C G T A T C G A G C A T G A C T A G C T

NKX2-3/MA0672.1/Jaspar

Match Rank:3
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-CCACCTTAAA
ACCACTTGAA-
 A C G T A G T C G T A C G C T A A T G C G T A C G A C T G C A T G C T A C G T A C T G A
T G C A T A G C G A T C G C T A G T A C A C G T A G C T T C A G C G T A T C G A A C G T

PH0113.1_Nkx2-4/Jaspar

Match Rank:4
Score:0.62
Offset:-4
Orientation:forward strand
Alignment:----CCACCTTAAA--
TAAGCCACTTGAAATT
 A C G T A C G T A C G T A C G T A G T C G T A C G C T A A T G C G T A C G A C T G C A T G C T A C G T A C T G A A C G T A C G T
G C A T C G T A C G T A C T A G T A G C G A T C G C T A G T A C A C G T G A C T T C A G C G T A T G C A G C T A G C A T G A C T

PH0115.1_Nkx2-6/Jaspar

Match Rank:5
Score:0.61
Offset:-4
Orientation:forward strand
Alignment:----CCACCTTAAA--
TAAGCCACTTAACATT
 A C G T A C G T A C G T A C G T A G T C G T A C G C T A A T G C G T A C G A C T G C A T G C T A C G T A C T G A A C G T A C G T
C A G T C T G A C T G A C A T G T A G C A G T C C G T A G T A C A C G T A G C T C T G A C G T A T G A C G C T A G A C T G A C T

Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:6
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--CCACCTTAAA
TGACACCT----
 A C G T A C G T A G T C G T A C G C T A A T G C G T A C G A C T G C A T G C T A C G T A C T G A
G A C T T C A G C T G A A G T C C T G A T A G C G A T C G A C T A C G T A C G T A C G T A C G T

ZNF354C/MA0130.1/Jaspar

Match Rank:7
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--CCACCTTAAA
ATCCAC------
 A C G T A C G T A G T C G T A C G C T A A T G C G T A C G A C T G C A T G C T A C G T A C T G A
T G C A G C A T A G T C A G T C C G T A A T G C A C G T A C G T A C G T A C G T A C G T A C G T

PB0092.1_Zbtb7b_1/Jaspar

Match Rank:8
Score:0.60
Offset:-4
Orientation:forward strand
Alignment:----CCACCTTAAA-
AAGCCCCCCAAAAAT
 A C G T A C G T A C G T A C G T A G T C G T A C G C T A A T G C G T A C G A C T G C A T G C T A C G T A C T G A A C G T
C T G A C T G A T C A G T A G C T A G C G T A C G T A C A G T C G A T C G C T A G C T A G C T A C G T A G T C A A G C T

PH0171.1_Nkx2-1/Jaspar

Match Rank:9
Score:0.60
Offset:-4
Orientation:forward strand
Alignment:----CCACCTTAAA--
TAAGCCACTTGAAATT
 A C G T A C G T A C G T A C G T A G T C G T A C G C T A A T G C G T A C G A C T G C A T G C T A C G T A C T G A A C G T A C G T
A G C T T C G A C T G A A T C G T A G C A G T C G C T A G T A C A C G T G A C T T C A G C G T A T G C A G T C A G C A T G C A T

Nkx3-1/MA0124.2/Jaspar

Match Rank:10
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-CCACCTTAAA
ACCACTTAA--
 A C G T A G T C G T A C G C T A A T G C G T A C G A C T G C A T G C T A C G T A C T G A
T C G A T A G C A G T C G C T A G T A C A G C T A G C T G C T A C T G A A C G T A C G T