Information for 2-AAATGCACTGTCT (Motif 2)

G T C A G T C A G T C A G A C T A C T G A T G C C T G A A T G C A C G T A C T G A C G T A T G C A C G T
Reverse Opposite:
C G T A A T C G C G T A A G T C G T C A A T C G A G C T A T C G G T A C C G T A A C G T A C G T C A G T
p-value:1e-11
log p-value:-2.741e+01
Information Content per bp:1.797
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif1.09%
Number of Background Sequences with motif12.5
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets57.9 +/- 27.3bp
Average Position of motif in Background59.0 +/- 20.9bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.11
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:1
Score:0.62
Offset:7
Orientation:forward strand
Alignment:AAATGCACTGTCT--
-------CTGTCTGG
 G T C A G T C A G T C A G A C T A C T G A T G C C T G A A T G C A C G T A C T G A C G T A T G C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T G C G A C T A C T G C A G T G A T C A C G T T A C G T A C G

PB0091.1_Zbtb3_1/Jaspar

Match Rank:2
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--AAATGCACTGTCT--
NNNANTGCAGTGCNNTT
 A C G T A C G T G T C A G T C A G T C A G A C T A C T G A T G C C T G A A T G C A C G T A C T G A C G T A T G C A C G T A C G T A C G T
T G A C T A C G T A C G T G C A T C G A A C G T T A C G G T A C C G T A A T C G A G C T C A T G T A G C T A C G T C G A G A C T G A C T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:3
Score:0.59
Offset:5
Orientation:forward strand
Alignment:AAATGCACTGTCT--
-----VBSYGTCTGG
 G T C A G T C A G T C A G A C T A C T G A T G C C T G A A T G C A C G T A C T G A C G T A T G C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T A C G A T C G T A G C G A T C A C T G A C G T A G T C A C G T C T A G A T C G

PB0060.1_Smad3_1/Jaspar

Match Rank:4
Score:0.58
Offset:3
Orientation:reverse strand
Alignment:AAATGCACTGTCT-------
---NNTNNTGTCTGGNNTNG
 G T C A G T C A G T C A G A C T A C T G A T G C C T G A A T G C A C G T A C T G A C G T A T G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C A G T A T C G C G A T T C A G T G C A G A C T A C T G C A G T A G T C A C G T T C A G T C A G G C T A G C A T C G A T G A C T C A T G

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:5
Score:0.57
Offset:7
Orientation:forward strand
Alignment:AAATGCACTGTCT--
-------TWGTCTGV
 G T C A G T C A G T C A G A C T A C T G A T G C C T G A A T G C A C G T A C T G A C G T A T G C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G C T G C A T A C T G A C G T A G T C A C G T C T A G T A C G

SOX4/MA0867.1/Jaspar

Match Rank:6
Score:0.56
Offset:-4
Orientation:forward strand
Alignment:----AAATGCACTGTCT
GAACAATTGCAGTGTT-
 A C G T A C G T A C G T A C G T G T C A G T C A G T C A G A C T A C T G A T G C C T G A A T G C A C G T A C T G A C G T A T G C A C G T
C T A G C G T A C T G A A G T C C T G A C T G A A C G T A C G T C A T G A G T C C T G A A C T G A C G T C T A G A G C T C G A T A C G T

Sox11/MA0869.1/Jaspar

Match Rank:7
Score:0.55
Offset:-3
Orientation:forward strand
Alignment:---AAATGCACTGTCT
AACAATTTCAGTGTT-
 A C G T A C G T A C G T G T C A G T C A G T C A G A C T A C T G A T G C C T G A A T G C A C G T A C T G A C G T A T G C A C G T
C G T A C G T A A G T C C G T A C G T A A C G T A G C T C A G T A G T C C G T A A C T G A C G T A C T G A C G T A G C T A C G T

Sox17/MA0078.1/Jaspar

Match Rank:8
Score:0.55
Offset:3
Orientation:forward strand
Alignment:AAATGCACTGTCT
---CTCATTGTC-
 G T C A G T C A G T C A G A C T A C T G A T G C C T G A A T G C A C G T A C T G A C G T A T G C A C G T
A C G T A C G T A C G T G A C T G A C T G A T C C G T A A G C T A C G T A C T G A C G T A T G C A C G T

PB0166.1_Sox12_2/Jaspar

Match Rank:9
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:AAATGCACTGTCT----
-ANTCCTTTGTCTNNNN
 G T C A G T C A G T C A G A C T A C T G A T G C C T G A A T G C A C G T A C T G A C G T A T G C A C G T A C G T A C G T A C G T A C G T
A C G T C G T A G C A T A C G T A G T C A T G C C G A T A G C T C G A T T C A G A C G T T A G C G A C T T C A G G C A T A C G T A C G T

Sox6/MA0515.1/Jaspar

Match Rank:10
Score:0.54
Offset:4
Orientation:forward strand
Alignment:AAATGCACTGTCT-
----CCATTGTTTT
 G T C A G T C A G T C A G A C T A C T G A T G C C T G A A T G C A C G T A C T G A C G T A T G C A C G T A C G T
A C G T A C G T A C G T A C G T A G T C A G T C C G T A A C G T A C G T A C T G A C G T A G C T G A C T A G C T